[Home] | [Total List]

[192162_at] ATP-dependent RNA helicase like

Description F58G11.2 /REP_DB=WormBase Gene ID /WP=CE11402 /TR=P90897 /GB=CAB03153.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=ATP-dependent RNA helicase like
Cluster 6grp_high1_10_10 > 37      4grp_high_8_8 > 0      6grp_total > 34      4grp_total > 07      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 125.9
(1.5)
P 		80.9
(-3)
P 		85.2
(-2.6)
A 		140.6
(3)
P 		60
B 106.6
(2.1)
P 		76.9
(-3)
P 		112.1
(3)
A 		102.9
(1.4)
P 		35
C 131.8
(3)
P 		64.3
(-3)
A 		109.2
(1)
P 		106.6
(0.8)
P 		68
avr 121.4
(3) 		74
(-3) 		102.2
(0.6) 		116.7
(2.4) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 76.7
(-0.7)
A 		105.8
(3)
P 		84.4
(0.2)
P 		66.6
(-2)
P 		59.2
(-3)
P 		69.7
(-1.6)
A 		47
B 115.6
(3)
P 		87
(-0.8)
P 		84.8
(-1)
A 		69.9
(-3)
P 		77.6
(-2)
P 		81.5
(-1.5)
P 		46
C 129.3
(3)
P 		79.7
(0.2)
P 		129.7
(3)
P 		23.5
(-3)
A 		87.4
(0.6)
P 		93.5
(1)
P 		106
avr 107.2
(3) 		90.8
(1.2) 		99.6
(2.2) 		53.3
(-3) 		74.7
(-0.6) 		81.6
(0.2) 		54
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 45.8
(3)
P 		17.6
(-3)
P 		22.3
(-2)
A 		20.6
(-2.4)
P 		28
B 34
(3)
P 		19
(-3)
P 		26
(-0.2)
A 		21.9
(-1.8)
P 		15
C 43.6
(3)
P 		18.5
(-2.9)
A 		38.1
(1.7)
P 		18
(-3)
P 		26
avr 41.1
(3) 		18.4
(-3) 		28.8
(-0.3) 		20.2
(-2.5) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 14.1
(-3)
A 		37.6
(3)
P 		18.4
(-1.9)
P 		16.9
(-2.3)
P 		17.9
(-2)
P 		17
(-2.3)
A 		24
B 40.2
(3)
P 		29
(-0.1)
P 		20.6
(-2.4)
A 		18.5
(-3)
P 		31.5
(0.6)
P 		30.4
(0.3)
P 		22
C 47.9
(3)
P 		24.3
(-0.3)
P 		33
(0.9)
P 		4.7
(-3)
A 		28.3
(0.3)
P 		31.3
(0.7)
P 		43
avr 34.1
(3) 		30.3
(1.9) 		24
(0.1) 		13.4
(-3) 		25.9
(0.6) 		26.2
(0.7) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192162_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13363
Sequence Type Exemplar sequence
Representative Public ID F58G11.2 NCBI
Target Description F58G11.2 /REP_DB=WormBase Gene ID /WP=CE11402 /TR=P90897 /GB=CAB03153.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=ATP-dependent RNA helicase like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073982(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073982 NCBI Caenorhabditis elegans F58G11.2 (F58G11.2) mRNA, complete cds. 11/11 None
SNAP00000001240 ENSEMBL cdna:SNAP chromosome:CEL140:V:13667993:13671490:1 10/11 None
GENEFINDER00000001247 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13667993:13671490:1 10/11 None
F58G11.2 ENSEMBL cdna:known chromosome:CEL140:V:13667993:13671865:1 gene:F58G11.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13667992-13671542(+) 100.0 100.0
Public Domain and Genome References
Gene Title ATP-dependent RNA helicase like
Ensembl F58G11.2
Entrez Gene 179855 Entrez gene
SwissProt P90897 EMBL-EBI
WormBase CE11402 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
4386 helicase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
8026 ATP-dependent helicase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03153 Hypothetical protein F58G11.2 [Caenorhabditis elegans] ref|NP_506383.1| F58G11.2 [Caenorhabditis elegans] 0.0
blast CAE66266 Hypothetical protein CBG11510 [Caenorhabditis briggsae] 1.0E-140
blast AAT12450 vasa protein [Copidosoma floridanum] gb|AAT11555.1| vasa-like protein [Copidosoma floridanum] 6.0E-58
blast AAT12450 vasa protein [Copidosoma floridanum] gb|AAT11555.1| vasa-like protein [Copidosoma floridanum] 7.0E-58
Protein Domains
Database ID Description E-Value
Pfam IPR001650 EMBL-EBI Helicase, C-terminal 1.0E-28
Pfam IPR001410 EMBL-EBI DEAD/DEAH box helicase 2.1E-60
Pfam IPR001650 EMBL-EBI Helicase, C-terminal 1.0E-28
Pfam IPR001410 EMBL-EBI DEAD/DEAH box helicase 2.1E-60
Sequence
Target Sequence 
>C. ELEGANS:192162_AT
gacgcgatggcaaaatccagccgtggaaagagtggaactagcggttttggtcagcgaggt
ggatacggaggaagaggtggaggcttcggtggcactggtagaggaagaggtggtggtgtc
ttcggtggcggaggaagaggcggagacttcggaggttccggcaattttggtggatccggc
ggtggtggcagttttggaggatctggtggaggcggcggcttcggaggcgtaaaacccagc
ggatttggcggatctagaaacaatgccgagcctacatcatccgggggaggttttggtgct
ccaaaagcaccaactggattcccatcagacaacaatgatgcatctgaagatgcaccagcc
gccggcggttttggcttttctacgaaagctgcccaagatgcgaaaaaagctgaagagagt
gccactctgggaagttcaacatttggaacagctaataatgccgacgaggaaccaactgaa
accggaggtgagaatattattttctatacgttactattttatatgaaactttcttttcag
ccgatggcaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGCGATGGCAAAATCCAGCCGTG 650 379 2380 Antisense
GAACTAGCGGTTTTGGTCAGCGAGG 153 349 2414 Antisense
AAGAGGTGGAGGCTTCGGTGGCACT 496 151 2451 Antisense
GGCGGAGACTTCGGAGGTTCCGGCA 401 529 2518 Antisense
CAATTTTGGTGGATCCGGCGGTGGT 93 179 2541 Antisense
GGCTTCGGAGGCGTAAAACCCAGCG 605 533 2596 Antisense
AAACCCAGCGGATTTGGCGGATCTA 309 125 2611 Antisense
AGCCTACATCATCCGGGGGAGGTTT 321 1 2648 Antisense
CACCAACTGGATTCCCATCAGACAA 218 203 2687 Antisense
AGTGCCACTCTGGGAAGTTCAACAT 491 59 2797 Antisense
AACTTTCTTTTCAGCCGATGGCAAC 509 139 2906 Antisense
Sequence Source Affymetrix Proprietary Database