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[192160_s_at] monocarboxylate transporter like

Description M03B6.2 /REP_DB=WormBase Gene ID /WP=CE12336 /TR=Q93896 /GB=CAB01766.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=monocarboxylate transporter like
Cluster 6grp_highest_10_10 > 33      6grp_high1_10_10 > 23      4grp_highest_8_8 > 17      4grp_high_8_8 > 61      6grp_highest_nonorm > 51      6grp_total > 12      4grp_total > 59      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 445
1 2 3 4 range
A 737.5
(0.4)
P 		901.6
(3)
P 		866.1
(2.4)
P 		526.2
(-3)
P 		375
B 688.1
(-0.3)
P 		802.9
(1.3)
P 		929.4
(3)
P 		484.5
(-3)
P 		445
C 712.6
(-0.1)
P 		839.1
(1.9)
P 		904.6
(3)
P 		537.2
(-3)
P 		367
avr 712.7
(0.1) 		847.9
(2.2) 		900
(3) 		516
(-3) 		384

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 390
1 2 3 4 5 6 range
A 649.9
(-0.1)
P 		760.5
(3)
P 		575.8
(-2.1)
P 		666.6
(0.4)
P 		550.8
(-2.8)
P 		543.9
(-3)
P 		217
B 581.5
(-0.6)
P 		817.3
(3)
P 		602.7
(-0.3)
P 		569.8
(-0.8)
P 		427.6
(-3)
P 		427.8
(-3)
P 		390
C 642.6
(0.6)
P 		717
(1.9)
P 		777.4
(3)
P 		616.5
(0.2)
P 		467
(-2.5)
P 		435.9
(-3)
P 		342
avr 624.7
(0.2) 		764.9
(3) 		652
(0.7) 		617.6
(0) 		481.8
(-2.7) 		469.2
(-3) 		296
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 238
1 2 3 4 range
A 268.5
(3)
P 		195.7
(0.7)
P 		226.4
(1.7)
P 		77
(-3)
P 		192
B 219.4
(3)
P 		198.3
(1.9)
P 		215.4
(2.8)
P 		103.2
(-3)
P 		116
C 235.9
(0.9)
P 		241.3
(1)
P 		315.3
(3)
P 		90.6
(-3)
P 		225
avr 241.3
(2.6) 		211.8
(1.5) 		252.4
(3) 		90.3
(-3) 		162

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 152
1 2 3 4 5 6 range
A 119.8
(-3)
P 		270.5
(3)
P 		125.4
(-2.8)
P 		169.1
(-1)
P 		166.2
(-1.2)
P 		132.4
(-2.5)
P 		151
B 202.3
(-0.3)
P 		272.1
(3)
P 		146.4
(-3)
P 		150.9
(-2.8)
P 		173.7
(-1.7)
P 		159.5
(-2.4)
P 		126
C 238.2
(3)
P 		218.8
(2)
P 		197.9
(0.9)
P 		124
(-3)
P 		151.1
(-1.6)
P 		145.9
(-1.8)
P 		114
avr 186.8
(-0.7) 		253.8
(3) 		156.6
(-2.4) 		148
(-2.9) 		163.7
(-2) 		145.9
(-3) 		108
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192160_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17898
Sequence Type Exemplar sequence
Representative Public ID M03B6.2 NCBI
Target Description M03B6.2 /REP_DB=WormBase Gene ID /WP=CE12336 /TR=Q93896 /GB=CAB01766.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=monocarboxylate transporter like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077907(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077907 NCBI Caenorhabditis elegans M03B6.2 (M03B6.2) mRNA, complete cds. 11/11 None
GENEFINDER00000014982 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13852855:13856885:1 11/11 None
SNAP00000014976 ENSEMBL cdna:SNAP chromosome:CEL140:X:13854599:13856885:1 11/11 None
M03B6.2 ENSEMBL cdna:known chromosome:CEL140:X:13852827:13857236:1 gene:M03B6.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13852854-13856885(+) 100.0 100.0
Public Domain and Genome References
Gene Title monocarboxylate transporter like
Ensembl M03B6.2
Entrez Gene 181497 Entrez gene
SwissProt Q93896 EMBL-EBI
WormBase CE12336 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1641018_S_AT dm
DROSGENOME1:151760_AT dm
DROSGENOME1:143046_AT dm
Protein Similarities
Method ID Description E-Value
blast CAB01766 Hypothetical protein M03B6.2 [Caenorhabditis elegans] ref|NP_510308.1| M03B6.2 [Caenorhabditis elegans] 0.0
blast CAE63076 Hypothetical protein CBG07361 [Caenorhabditis briggsae] 0.0
blast NP_503655 Y19D10A.12 [Caenorhabditis elegans] gb|AAK68412.2| Hypothetical protein Y19D10A.12 [Caenorhabditis elegans] 1.0E-128
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510308.1 12 38-60,80-102,109-131,135-157,166-185,200-218,387-409,424-446,453-475,479-501,513-535,545-567
M03B6.2 12 38-60,80-102,109-131,135-157,166-185,200-218,387-409,424-446,453-475,479-501,513-535,545-567
GENEFINDER00000014982 12 38-60,80-102,109-131,135-157,166-185,200-218,387-409,424-446,453-475,479-501,513-535,545-567
SNAP00000014976 10 57-79,83-105,112-131,146-164,333-355,370-392,399-421,425-447,459-481,491-513
Sequence
Target Sequence 
>C. ELEGANS:192160_S_AT
tttccggtactttaactctttgctgcttctatgtaccattcatctatctgggaaatcatt
tggataagatcgaggggctcaccactgctgaaaagtctttcacagtctccctcatcggag
ttctcaacattgttgctcgtattggctgtggtatcctggcggaccgtccggaagtgtccg
ctcttgctgtcaataacttcgccctaattgctgccggtcttgccaccatgactgtaccat
tgtacactgcttactggcagttcttggcattctgtgttccattctcaattggagtcgctt
gctttgccgcgctgcgttctatcattgtagtggagttgattggattagaaaaattgagca
acgcgtttggaatccttctcacgttcatgggagttggagctgttgtgggatcaccactgg
ccgctgctatgaaagactacactggaaactttgacacttccttctacgtcatgggagccc
tgatgactattagtggagcaatgtgcattccactcggaggactccgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCCGGTACTTTAACTCTTTGCTG 331 667 1187 Antisense
ACTCTTTGCTGCTTCTATGTACCAT 247 101 1201 Antisense
TGAAAAGTCTTTCACAGTCTCCCTC 533 571 1275 Antisense
GTTGCTCGTATTGGCTGTGGTATCC 604 439 1318 Antisense
TTGCTGTCAATAACTTCGCCCTAAT 203 703 1370 Antisense
TTGCCACCATGACTGTACCATTGTA 384 701 1406 Antisense
GGCAGTTCTTGGCATTCTGTGTTCC 257 537 1442 Antisense
CTCAATTGGAGTCGCTTGCTTTGCC 56 225 1470 Antisense
GAGCAACGCGTTTGGAATCCTTCTC 108 391 1542 Antisense
GAATCCTTCTCACGTTCATGGGAGT 178 331 1556 Antisense
TGCATTCCACTCGGAGGACTCCGTA 599 573 1690 Antisense
Sequence Source Affymetrix Proprietary Database