[Home] | [Total List]

[192156_at] GTP-binding protein

Description F57H12.1 /REP_DB=WormBase Gene ID /WP=CE17122 /GEN=arf-3 /TR=O45099 /GB=AAC02598.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=GTP-binding protein
Cluster 6grp_highest_10_10 > 28      6grp_high1_10_10 > 72      4grp_highest_8_8 > 05      4grp_high_8_8 > 30      6grp_highest_nonorm > 37      6grp_total > 73      4grp_total > 33      6grp_highest_sub > 04      6grp_cgc > 76      6grp_high1_sub > 04      6grp_cgc_sub > 03_04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5246
1 2 3 4 range
A 6037.4
(-3)
P 		9270.6
(3)
P 		8341.8
(1.3)
P 		9081.7
(2.6)
P 		3233
B 5583.9
(-3)
P 		8614.5
(0.5)
P 		7581.9
(-0.7)
P 		10829.5
(3)
P 		5246
C 6178.5
(-3)
P 		8831.3
(3)
P 		8062.5
(1.3)
P 		8459.6
(2.2)
P 		2653
avr 5933.3
(-3) 		8905.5
(2.1) 		7995.4
(0.5) 		9456.9
(3) 		3524

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1677
1 2 3 4 5 6 range
A 4385.6
(-3)
P 		4994.3
(-0.5)
P 		5855.5
(3)
P 		5859.7
(3)
P 		5088.4
(-0.1)
P 		4562.3
(-2.3)
P 		1474
B 5089.8
(-0.7)
P 		4855.9
(-1.6)
P 		5896.3
(2.4)
P 		6062.4
(3)
P 		6002.6
(2.8)
P 		4477.1
(-3)
P 		1585
C 4752.2
(-2.1)
P 		4541.7
(-3)
P 		5569.1
(1.3)
P 		5478.4
(0.9)
P 		5985
(3)
P 		5373
(0.5)
P 		1443
avr 4742.5
(-3) 		4797.3
(-2.7) 		5773.6
(2.8) 		5800.2
(3) 		5692
(2.4) 		4804.1
(-2.7) 		1058
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1481
1 2 3 4 range
A 2198.2
(3)
P 		2012.4
(1.7)
P 		2180.7
(2.9)
P 		1329.4
(-3)
P 		869
B 1780.6
(-2.7)
P 		2127.6
(1)
P 		1756.9
(-3)
P 		2307.8
(3)
P 		551
C 2045.2
(-0.3)
P 		2539.1
(1.8)
P 		2810
(3)
P 		1426.4
(-3)
P 		1384
avr 2008
(0.4) 		2226.4
(2.8) 		2249.2
(3) 		1687.9
(-3) 		561

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1630
1 2 3 4 5 6 range
A 808.4
(-3)
P 		1776.2
(3)
P 		1275.2
(-0.1)
P 		1486.2
(1.2)
P 		1535.5
(1.5)
P 		1110.8
(-1.1)
P 		968
B 1771
(-1)
P 		1616.3
(-1.9)
P 		1431.8
(-3)
P 		1605.7
(-2)
P 		2438.8
(3)
P 		1669.5
(-1.6)
P 		1007
C 1761.4
(1.7)
P 		1385.8
(-1)
P 		1417.4
(-0.7)
P 		1101.7
(-3)
P 		1936.7
(3)
P 		1798.7
(2)
P 		835
avr 1446.9
(-2.3) 		1592.8
(-0.8) 		1374.8
(-3) 		1397.9
(-2.8) 		1970.3
(3) 		1526.3
(-1.5) 		596
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192156_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10192
Sequence Type Exemplar sequence
Representative Public ID F57H12.1 NCBI
Target Description F57H12.1 /REP_DB=WormBase Gene ID /WP=CE17122 /GEN=arf-3 /TR=O45099 /GB=AAC02598.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=GTP-binding protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068935(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068935 NCBI Caenorhabditis elegans ADP-Ribosylation Factor related family member (arf-3) (arf-3) mRNA, complete cds. 11/11 None
SNAP00000044156 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7982528:7983457:1 11/11 None
GENEFINDER00000044160 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7982528:7983457:1 11/11 None
F57H12.1 ENSEMBL cdna:known chromosome:CEL140:IV:7982509:7983913:1 gene:F57H12.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7982533-7983463(+) 100.0 100.0
Public Domain and Genome References
Gene Title GTP-binding protein
Gene Symbol arf-3
Ensembl F57H12.1
Entrez Gene 177595 Entrez gene
SwissProt O45099 EMBL-EBI
WormBase CE17122 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:265187_AT ADP-ribosylation factor at
ATGENOME1:13069_AT ADP-ribosylation factor at
CANINE:1604196_AT similar to ADP-ribosylation factor 4 cfa
CANINE_2:CFA.18724.1.S1_S_AT similar to ADP-ribosylation factor 4 cfa
DROSOPHILA_2:1624693_AT ADP ribosylation factor 102F dm
DROSGENOME1:143715_AT ADP ribosylation factor 102F dm
HG-U95AV2:36585_AT ADP-ribosylation factor 4 hs
HG-U133_PLUS_2:201096_S_AT ADP-ribosylation factor 4 hs
HG-U133A_2:201096_S_AT ADP-ribosylation factor 4 hs
HG-U133A:201096_S_AT ADP-ribosylation factor 4 hs
HG-U133_PLUS_2:201097_S_AT ADP-ribosylation factor 4 hs
HG-U133A:201097_S_AT ADP-ribosylation factor 4 hs
HG-FOCUS:201097_S_AT ADP-ribosylation factor 4 hs
HG-U133A_2:201097_S_AT ADP-ribosylation factor 4 hs
HUGENEFL:M36341_AT ADP-ribosylation factor 4 hs
U133_X3P:G6995998_3P_A_AT ADP-ribosylation factor 4 hs
U133_X3P:HS.75290.0.S1_3P_A_AT ADP-ribosylation factor 4 hs
HG-U95C:53358_AT ADP-ribosylation factor 4 hs
HG-U95C:61605_AT ADP-ribosylation factor 4 hs
MOE430A:1423053_AT ADP-ribosylation factor 4 mm
MOUSE430_2:1423053_AT ADP-ribosylation factor 4 mm
MOUSE430A_2:1423053_AT ADP-ribosylation factor 4 mm
MOUSE430_2:1423052_AT ADP-ribosylation factor 4 mm
MOE430A:1423052_AT ADP-ribosylation factor 4 mm
MOUSE430A_2:1423052_AT ADP-ribosylation factor 4 mm
MOUSE430A_2:1439367_X_AT ADP-ribosylation factor 4 mm
MOE430A:1439367_X_AT ADP-ribosylation factor 4 mm
MOUSE430_2:1439367_X_AT ADP-ribosylation factor 4 mm
MU11KSUBA:D87901_S_AT ADP-ribosylation factor 4 mm
MG-U74AV2:160082_S_AT ADP-ribosylation factor 4 mm
MG-U74BV2:164060_AT ADP-ribosylation factor 4 mm
MOE430A:1434074_X_AT ADP-ribosylation factor 4 mm
MOUSE430A_2:1434074_X_AT ADP-ribosylation factor 4 mm
MOUSE430_2:1434074_X_AT ADP-ribosylation factor 4 mm
MOE430B:1457348_AT ADP-ribosylation factor 4 (Arf4), mRNA mm
MOUSE430_2:1457348_AT ADP-ribosylation factor 4 (Arf4), mRNA mm
MU19KSUBC:TC38999_AT ADP-ribosylation factor 4 (Arf4), mRNA mm
MU19KSUBC:TC38999_G_AT ADP-ribosylation factor 4 (Arf4), mRNA mm
MU19KSUBC:TC39000_AT ADP-ribosylation factor 4 (Arf4), mRNA mm
MU19KSUBC:TC39000_G_AT ADP-ribosylation factor 4 (Arf4), mRNA mm
RG-U34A:L12383_AT ADP-ribosylation factor 4 rn
RG-U34B:RC_AI028850_F_AT ADP-ribosylation factor 4 rn
RAE230A:1398758_AT ADP-ribosylation factor 4 rn
RAT230_2:1398758_AT ADP-ribosylation factor 4 rn
RAE230B:1381498_AT ADP-ribosylation factor 4 rn
RAT230_2:1381498_AT ADP-ribosylation factor 4 rn
RG-U34B:RC_AA956116_AT ADP-ribosylation factor 4 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6886 intracellular protein transport inferred from electronic annotation QuickGO AmiGO
7264 small GTPase mediated signal transduction inferred from electronic annotation QuickGO AmiGO
15031 protein transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5525 GTP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC02598 Adp-ribosylation factor related protein 3 [Caenorhabditis elegans] ref|NP_501336.1| ADP-Ribosylation Factor related family member (arf-3) [Caenorhabditis elegans] gb|AAR89636.1| ADP-ribosylation factor related (20.5 kD) (arf-3) [Caenorhabditis elegans] 1.0E-100
blast CAE70927 Hypothetical protein CBG17727 [Caenorhabditis briggsae] 2.0E-99
blast AAH91641 MGC69501 protein [Xenopus tropicalis] ref|NP_001025648.1| MGC69501 protein [Xenopus tropicalis] 4.0E-88
Protein Domains
Database ID Description E-Value
Pfam IPR006689 EMBL-EBI ARF/SAR superfamily 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:192156_AT
ccctcttcaatcgcctttttggcaagagacaggttcgtatattgatggtcggactcgatg
ctgccggaaaaactacgatcctctacaaactcaagcttggagagatcgtcaccacgatcc
caactatcggattcaatgttgaaactgttgaatacaagaacatttccttcactgtgtggg
atgtcggaggtcaggacaagatccgtccactctggaggcactatttccaaaacacacaag
gacttatcttcgtcgttgactcgaacgacaaggagcgtattgaagaatcacgtgaagagc
tacataagatgctgaacgaggacgaacttcgtgacgctactcttctcgttttcgccaaca
agcaggatcttccaaatgctatgaccgccgccgaattgaccgacaagcttggacttcaca
atctccgctcaagacagtggtac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCTCTTCAATCGCCTTTTTGGCAA 630 259 32 Antisense
ATTGATGGTCGGACTCGATGCTGCC 140 5 72 Antisense
TCACCACGATCCCAACTATCGGATT 550 625 140 Antisense
GAACATTTCCTTCACTGTGTGGGAT 672 349 189 Antisense
AAGGACTTATCTTCGTCGTTGACTC 322 161 269 Antisense
AGGACGAACTTCGTGACGCTACTCT 621 55 350 Antisense
TTCTCGTTTTCGCCAACAAGCAGGA 179 689 374 Antisense
GATCTTCCAAATGCTATGACCGCCG 151 419 397 Antisense
CCGCCGAATTGACCGACAAGCTTGG 407 261 419 Antisense
CAAGCTTGGACTTCACAATCTCCGC 691 185 435 Antisense
CAATCTCCGCTCAAGACAGTGGTAC 403 181 450 Antisense
Sequence Source Affymetrix Proprietary Database