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[192148_at]

Description T07C5.1A /REP_DB=WormBase Gene ID /WP=CE02335 /TR=SW:Q22295 /GB=CAA90296.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=UDP-glucuronosyltransferase
Cluster 6grp_highest_10_10 > 39      6grp_high1_10_10 > 92      4grp_highest_8_8 > 34      4grp_high_8_8 > 58      6grp_highest_nonorm > 72      6grp_total > 84      4grp_total > 62      6grp_highest_sub > 04      6grp_high1_sub > 04_05      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 331
1 2 3 4 range
A 443.5
(3)
P 		279.8
(-0.1)
P 		365.5
(1.5)
P 		122.1
(-3)
P 		321
B 453.1
(3)
P 		251.8
(-0.9)
P 		333.5
(0.7)
P 		145.7
(-3)
P 		307
C 384.8
(1.4)
P 		363.8
(0.9)
P 		453
(3)
P 		195.5
(-3)
P 		258
avr 427.1
(3) 		298.5
(0.2) 		384
(2.1) 		154.4
(-3) 		273

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 469
1 2 3 4 5 6 range
A 261
(-3)
P 		297.8
(-2.4)
P 		323.9
(-2)
P 		526.9
(1.3)
P 		633.6
(3)
P 		443.2
(-0.1)
P 		373
B 375.1
(-1.3)
P 		300.2
(-2.6)
P 		274.7
(-3)
P 		623.9
(3)
P 		530.4
(1.4)
P 		591.4
(2.4)
P 		349
C 352.7
(-2.5)
P 		321.3
(-3)
P 		424.6
(-1.5)
P 		729.5
(3)
P 		623.8
(1.4)
P 		372.2
(-2.3)
P 		408
avr 329.6
(-2.6) 		306.4
(-3) 		341.1
(-2.4) 		626.8
(3) 		595.9
(2.4) 		468.9
(0) 		320
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 144
1 2 3 4 range
A 161.5
(3)
P 		60.7
(-1.2)
P 		95.5
(0.2)
P 		17.9
(-3)
P 		144
B 144.5
(3)
P 		62.2
(-1.4)
P 		77.3
(-0.6)
P 		31.1
(-3)
P 		113
C 127.4
(1.5)
P 		104.6
(0.4)
P 		157.9
(3)
P 		33
(-3)
P 		125
avr 144.5
(3) 		75.8
(-0.5) 		110.2
(1.2) 		27.3
(-3) 		117

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 172
1 2 3 4 5 6 range
A 48.1
(-3)
P 		105.9
(-0.6)
P 		70.5
(-2.1)
P 		133.6
(0.6)
P 		191.2
(3)
P 		107.9
(-0.5)
P 		143
B 130.5
(-0.5)
P 		99.9
(-1.7)
P 		66.7
(-3)
P 		165.2
(0.8)
P 		215.5
(2.8)
P 		220.5
(3)
P 		154
C 130.7
(-1.1)
P 		98
(-3)
P 		108.1
(-2.4)
P 		146.7
(-0.2)
P 		201.9
(3)
P 		124.6
(-1.5)
P 		104
avr 103.1
(-1.9) 		101.3
(-2) 		81.8
(-3) 		148.5
(0.3) 		202.9
(3) 		151
(0.4) 		121
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192148_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17601
Sequence Type Exemplar sequence
Representative Public ID T07C5.1A NCBI
Target Description T07C5.1A /REP_DB=WormBase Gene ID /WP=CE02335 /TR=SW:Q22295 /GB=CAA90296.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=UDP-glucuronosyltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171786(11), NM_077716(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171786 NCBI Caenorhabditis elegans T07C5.1c (UDP-glucuronosyltransferase) mRNA, complete cds. 11/11 A 
NM_077716 NCBI Caenorhabditis elegans T07C5.1a (UDP-glucuronosyltransferase) mRNA, complete cds. 11/11 A 
GENEFINDER00000042492 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12692225:12695476:1 11/11 None
T07C5.1c ENSEMBL cdna:known chromosome:CEL140:X:12691593:12695476:1 gene:T07C5.1 11/11 A 
T07C5.1a ENSEMBL cdna:known chromosome:CEL140:X:12691654:12695561:1 gene:T07C5.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000042490 5/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181413 3 2 NM_077716 192148_at (11)
NM_171786 192148_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12691653-12695476(+) 100.0 100.0
Public Domain and Genome References
Ensembl T07C5.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD44148 Hypothetical protein T07C5.1c [Caenorhabditis elegans] ref|NP_741913.1| T07C5.1c [Caenorhabditis elegans] 0.0
blast CAA90296 Hypothetical protein T07C5.1a [Caenorhabditis elegans] ref|NP_510117.1| T07C5.1a [Caenorhabditis elegans] sp|Q22295|UGT16_CAEEL Putative UDP-glucuronosyltransferase UGT16 precursor (UDPGT) 0.0
blast CAE57225 Hypothetical protein CBG00090 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 6.8E-26
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 6.8E-26
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 6.8E-26
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741913.1 1 496-513
NP_510117.1 1 498-515
T07C5.1c 1 496-513
T07C5.1a 1 498-515
GENEFINDER00000042492 1 417-434
Sequence
Target Sequence 
>C. ELEGANS:192148_AT
gaaactgccggattatcattttgtagtaaaaacaactgcggatgacgaatcttctgcaca
attcttctcaactgttcaaaatgttgatttggtggattgggtaccacaaaaggcagtttt
gagacatgcaaacctgaaactatttgtgtctcacggaggaatgaatagtgtacttgagac
catgtactatggagttccaatggttataatgccagtattcactgaccaatttagaaatgg
aagaaatgttgagagacgtggagccgggaagatggtgctaagagaaaccgttgtgaaaga
gacatttttcgacgcgattcacagtgttttggaagagaaaagctactcctcgagtgtgaa
gcgaatttctcatcttatgaaaaacaagccattcacttctgaagaacgtgttacaaaatg
gatcgattttgtgctcaaatacgaaacctccgaacactttgacctggaaagcaacaactt
atcaattattgaacacaatcatcttgaccttttcttttatttgtgcataatctccctcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACTGCCGGATTATCATTTTGTA 540 357 1002 Antisense
CAACTGCGGATGACGAATCTTCTGC 32 187 1034 Antisense
CTTCTGCACAATTCTTCTCAACTGT 237 221 1052 Antisense
ACCTGAAACTATTTGTGTCTCACGG 152 89 1133 Antisense
TTTCGACGCGATTCACAGTGTTTTG 184 669 1308 Antisense
AAAGCTACTCCTCGAGTGTGAAGCG 449 123 1340 Antisense
GTGTGAAGCGAATTTCTCATCTTAT 363 487 1355 Antisense
GTGCTCAAATACGAAACCTCCGAAC 338 479 1432 Antisense
CCTCCGAACACTTTGACCTGGAAAG 483 265 1448 Antisense
AACACAATCATCTTGACCTTTTCTT 263 135 1493 Antisense
TTTTATTTGTGCATAATCTCCCTCC 106 675 1516 Antisense
Sequence Source Affymetrix Proprietary Database