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[192143_s_at] Sugar (and other) transporters

Description K10H10.1 /REP_DB=WormBase Gene ID /WP=CE16251 /TR=O45678 /GB=CAB05777.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Sugar (and other) transporters
Cluster 6grp_highest_10_10 > 81      6grp_high1_10_10 > 29      4grp_highest_8_8 > 07      4grp_high_8_8 > 21      6grp_highest_nonorm > 80      6grp_total > 29      4grp_total > 18      6grp_highest_sub > Cu      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 194
1 2 3 4 range
A 237.9
(-2.2)
P 		247.8
(-1.6)
P 		222.3
(-3)
P 		333.9
(3)
P 		112
B 203.3
(-1.5)
P 		206
(-1.4)
P 		173.1
(-3)
P 		295.1
(3)
P 		122
C 148.4
(-3)
P 		255.3
(0.3)
P 		224.9
(-0.6)
P 		342
(3)
P 		194
avr 196.5
(-3) 		236.4
(-1.1) 		206.8
(-2.5) 		323.7
(3) 		127

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 156
1 2 3 4 5 6 range
A 286.7
(3)
P 		205.4
(-0.3)
P 		140
(-3)
P 		140.2
(-3)
P 		197.4
(-0.7)
P 		193.9
(-0.8)
P 		147
B 281.9
(3)
P 		184.1
(-1.4)
P 		147.8
(-3)
P 		179.1
(-1.6)
P 		216.9
(0.1)
P 		198.2
(-0.7)
P 		134
C 267.3
(3)
P 		205.3
(0.3)
P 		165.5
(-1.5)
P 		131.2
(-3)
P 		207
(0.3)
P 		194
(-0.2)
P 		136
avr 278.6
(3) 		198.3
(-0.8) 		151.1
(-3) 		150.2
(-3) 		207.1
(-0.3) 		195.4
(-0.9) 		128
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 86.6
(3)
P 		53.8
(-2.2)
P 		58.1
(-1.5)
P 		48.9
(-3)
P 		38
B 64.8
(3)
P 		50.9
(-0.4)
P 		40.1
(-3)
P 		62.9
(2.5)
P 		25
C 49.1
(-3)
P 		73.4
(2)
P 		78.4
(3)
P 		57.7
(-1.2)
P 		29
avr 66.8
(3) 		59.4
(-1.3) 		58.9
(-1.6) 		56.5
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 52.8
(0.1)
P 		73.1
(3)
P 		30.5
(-3)
P 		35.6
(-2.3)
P 		59.6
(1.1)
P 		47.2
(-0.6)
P 		43
B 98.1
(3)
P 		61.3
(-0.5)
P 		35.9
(-3)
P 		47.4
(-1.9)
P 		88.1
(2)
P 		73.9
(0.7)
P 		62
C 99.1
(3)
P 		62.6
(-0)
P 		42.1
(-1.7)
P 		26.4
(-3)
P 		67
(0.4)
P 		64.9
(0.2)
P 		73
avr 83.3
(3) 		65.7
(0.8) 		36.2
(-3) 		36.5
(-3) 		71.6
(1.5) 		62
(0.3) 		47
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192143_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3785
Sequence Type Exemplar sequence
Representative Public ID K10H10.1 NCBI
Target Description K10H10.1 /REP_DB=WormBase Gene ID /WP=CE16251 /TR=O45678 /GB=CAB05777.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Sugar (and other) transporters
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064606(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064606 NCBI Caenorhabditis elegans K10H10.1 (K10H10.1) mRNA, complete cds. 11/11 None
SNAP00000031894 ENSEMBL cdna:SNAP chromosome:CEL140:II:14489699:14492456:1 11/11 None
GENEFINDER00000031907 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14489839:14492456:1 11/11 None
K10H10.1 ENSEMBL cdna:known chromosome:CEL140:II:14489693:14492766:1 gene:K10H10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14489695-14492453(+) 100.0 100.0
Public Domain and Genome References
Gene Title Sugar (and other) transporters
Ensembl K10H10.1
Entrez Gene 175106 Entrez gene
SwissProt O45678 EMBL-EBI
WormBase CE16251 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.19758.1.S1_AT similar to Putative transporter C20orf59 cfa
CANINE_2:CFAAFFX.19760.1.S1_AT similar to Putative transporter C20orf59 cfa
CANINE_2:CFAAFFX.19760.1.S1_S_AT similar to Putative transporter C20orf59 cfa
DROSOPHILA_2:1625271_AT dm
DROSGENOME1:141679_AT dm
CHICKEN:GGAAFFX.11396.1.S1_S_AT similar to bA305P22.2.1 (novel protein, isoform 1) gga
CHICKEN:GGAAFFX.3573.2.S1_AT similar to bA305P22.2.1 (novel protein, isoform 1) gga
CHICKEN:GGAAFFX.3573.3.S1_S_AT similar to bA305P22.2.1 (novel protein, isoform 1) gga
HG-U133_PLUS_2:233328_X_AT chromosome 20 open reading frame 59 hs
HG-U133B:233328_X_AT chromosome 20 open reading frame 59 hs
HG-U133_PLUS_2:219559_AT chromosome 20 open reading frame 59 hs
HG-U133A:219559_AT chromosome 20 open reading frame 59 hs
HG-U133A_2:219559_AT chromosome 20 open reading frame 59 hs
HU35KSUBB:RC_N80797_AT chromosome 20 open reading frame 59 hs
U133_X3P:G11545794_3P_AT chromosome 20 open reading frame 59 hs
U133_X3P:HS.34487.2.S1_3P_X_AT chromosome 20 open reading frame 59 hs
U133_X3P:HS.34487.2.S1_3P_A_AT chromosome 20 open reading frame 59 hs
HG-U133_PLUS_2:232922_S_AT chromosome 20 open reading frame 59 hs
HG-U133B:232922_S_AT chromosome 20 open reading frame 59 hs
HG-U95B:44630_AT chromosome 20 open reading frame 59 hs
MOUSE430A_2:1425950_AT cDNA sequence BC019537 mm
MOUSE430_2:1425950_AT cDNA sequence BC019537 mm
MOE430A:1425950_AT cDNA sequence BC019537 mm
MG-U74BV2:116016_AT CDNA sequence BC019537, mRNA (cDNA clone MGC:28538 IMAGE:4194357) mm
MU19KSUBA:TC16245_AT CDNA sequence BC019537, mRNA (cDNA clone MGC:28538 IMAGE:4194357) mm
Protein Similarities
Method ID Description E-Value
blast CAB05777 Hypothetical protein K10H10.1 [Caenorhabditis elegans] ref|NP_497007.1| K10H10.1 [Caenorhabditis elegans] 0.0
blast CAE57932 Hypothetical protein CBG00985 [Caenorhabditis briggsae] 0.0
blast EAA14792 ENSANGP00000021389 [Anopheles gambiae str. PEST] ref|XP_319697.2| ENSANGP00000021389 [Anopheles gambiae str. PEST] 9.0E-91
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497007.1 8 90-112,122-144,157-179,184-206,291-313,333-355,385-407,417-439
K10H10.1 8 90-112,122-144,157-179,184-206,291-313,333-355,385-407,417-439
SNAP00000031894 8 90-112,122-144,157-179,184-206,291-313,333-355,385-407,417-439
GENEFINDER00000031907 8 63-85,95-117,130-152,157-179,264-286,306-328,358-380,390-412
Sequence
Target Sequence 
>C. ELEGANS:192143_S_AT
tccatggggaaccctgttccgtcatcctgctttctgggctgccgcagttgctcagtacac
tggcggcaactcgtattcgattctgttcaactggctcccatcgtatttccacgagacatt
cccgactgcgaagggttttgtatacaatgtggtaccatcgttggcgatcgttgtcacctc
attggtggccccagtgatggcgtctcgtgcgctgtccgagggaaaaactgtgacctatac
gagaaaattgatggaaggagccagtctactgggaatcgcattctgtttgatgctagtacc
aatgacatcatcgttctggatatcattgatcatattcactatggcaatggctgccagagg
gctacaccacggtggtgtttccgtaaatccacacgattttgcaccaaatcatgcgggatc
tgtttttggagttttcaatgcctgcggcgccatcaccggattcgtcggtgtctacattgc
tggtcacatcctggaagccacgaataacaactggtcgtacgtgttcgttgtgacggcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCATGGGGAACCCTGTTCCGTCAT 397 589 750 Antisense
TGCCGCAGTTGCTCAGTACACTGGC 244 585 789 Antisense
ACTGGCGGCAACTCGTATTCGATTC 56 97 808 Antisense
TATTCGATTCTGTTCAACTGGCTCC 158 665 823 Antisense
GAGACATTCCCGACTGCGAAGGGTT 323 391 862 Antisense
GGTACCATCGTTGGCGATCGTTGTC 326 505 900 Antisense
ATCGTTGTCACCTCATTGGTGGCCC 594 35 916 Antisense
GCAATGGCTGCCAGAGGGCTACACC 669 321 1093 Antisense
ATTCGTCGGTGTCTACATTGCTGGT 306 9 1209 Antisense
ATTGCTGGTCACATCCTGGAAGCCA 670 5 1225 Antisense
GTCGTACGTGTTCGTTGTGACGGCG 56 471 1263 Antisense
Sequence Source Affymetrix Proprietary Database