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[192142_at] Sugar (and other) transporters

Description C44C10.3 /REP_DB=WormBase Gene ID /WP=CE05410 /TR=Q18613 /GB=CAA93635.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Sugar (and other) transporters
Cluster 6grp_total > 20      4grp_total > 0      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 23.9
(-0.9)
A 		5.3
(-3)
A 		20.1
(-1.3)
A 		59.1
(3)
A 		54
B 23.3
(-3)
A 		28.3
(-2.5)
A 		40.2
(-1.4)
P 		84.9
(3)
P 		62
C 20.4
(-2.2)
A 		9.1
(-3)
A 		55.2
(0.2)
P 		94.5
(3)
P 		85
avr 22.5
(-2.2) 		14.2
(-3) 		38.5
(-0.8) 		79.5
(3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 19.7
(-1.3)
A 		34.5
(0.4)
A 		58.2
(3)
A 		16
(-1.7)
A 		30
(-0.1)
A 		4
(-3)
A 		54
B 16.6
(-1.3)
A 		46.6
(3)
A 		22.3
(-0.5)
A 		5.1
(-3)
A 		11.7
(-2)
A 		21
(-0.7)
A 		42
C 9.7
(-3)
A 		40.6
(3)
A 		37
(2.3)
A 		30.5
(1)
A 		23.7
(-0.3)
A 		13.9
(-2.2)
A 		31
avr 15.3
(-2.5) 		40.6
(3) 		39.2
(2.7) 		17.2
(-2.1) 		21.8
(-1.1) 		13
(-3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 8.7
(3)
A 		1.1
(-3)
A 		5.2
(0.2)
A 		8.6
(2.9)
A 		8
B 7.4
(-2.8)
A 		7
(-3)
A 		9.3
(-1.8)
P 		18.1
(3)
P 		11
C 6.8
(-1.5)
A 		2.6
(-3)
A 		19.2
(3)
P 		15.9
(1.8)
P 		17
avr 7.6
(-0.7) 		3.6
(-3) 		11.2
(1.3) 		14.2
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 3.6
(-1.7)
A 		12.3
(2.8)
A 		12.7
(3)
A 		4.1
(-1.4)
A 		9.1
(1.2)
A 		1
(-3)
A 		12
B 5.8
(-1.1)
A 		15.5
(3)
A 		5.4
(-1.3)
A 		1.4
(-3)
A 		4.8
(-1.6)
A 		7.8
(-0.3)
A 		14
C 3.6
(-3)
A 		12.4
(3)
A 		9.4
(1)
A 		6.1
(-1.3)
A 		7.7
(-0.2)
A 		4.7
(-2.3)
A 		9
avr 4.3
(-2.7) 		13.4
(3) 		9.2
(0.3) 		3.9
(-3) 		7.2
(-0.9) 		4.5
(-2.6) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192142_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16882
Sequence Type Exemplar sequence
Representative Public ID C44C10.3 NCBI
Target Description C44C10.3 /REP_DB=WormBase Gene ID /WP=CE05410 /TR=Q18613 /GB=CAA93635.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Sugar (and other) transporters
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077557(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077557 NCBI Caenorhabditis elegans C44C10.3 (C44C10.3) mRNA, complete cds. 11/11 None
SNAP00000037970 ENSEMBL cdna:SNAP chromosome:CEL140:X:11702457:11704212:1 11/11 None
GENEFINDER00000037981 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11702457:11704212:1 11/11 None
C44C10.3 ENSEMBL cdna:known chromosome:CEL140:X:11702457:11704212:1 gene:C44C10.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11702456-11704212(+) 100.0 100.0
Public Domain and Genome References
Gene Title Sugar (and other) transporters
Ensembl C44C10.3
Entrez Gene 183452 Entrez gene
SwissProt Q18613 EMBL-EBI
WormBase CE34162 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA93635 Hypothetical protein C44C10.3 [Caenorhabditis elegans] ref|NP_509958.2| C44C10.3 [Caenorhabditis elegans] 0.0
blast AAD14736 Hypothetical protein T12B3.2 [Caenorhabditis elegans] ref|NP_501177.1| T12B3.2 [Caenorhabditis elegans] 0.0
blast AAD14736 Hypothetical protein T12B3.2 [Caenorhabditis elegans] ref|NP_501177.1| T12B3.2 [Caenorhabditis elegans] 1.0E-174
blast CAE61870 Hypothetical protein CBG05850 [Caenorhabditis briggsae] 1.0E-166
blast CAE69390 Hypothetical protein CBG15510 [Caenorhabditis briggsae] 1.0E-155
Protein Domains
Database ID Description E-Value
Pfam IPR005828 EMBL-EBI General substrate transporter 1.8E-6
Pfam IPR005828 EMBL-EBI General substrate transporter 4.5E-6
Pfam IPR005828 EMBL-EBI General substrate transporter 4.5E-6
Pfam IPR005828 EMBL-EBI General substrate transporter 4.5E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509958.2 10 13-35,84-106,113-130,140-162,175-192,196-218,275-292,302-324,345-367,421-443
C44C10.3 10 13-35,84-106,113-130,140-162,175-192,196-218,275-292,302-324,345-367,421-443
SNAP00000037970 8 13-35,82-104,117-139,173-195,252-269,279-301,322-344,398-420
GENEFINDER00000037981 8 13-35,70-92,105-122,126-148,205-222,232-254,275-297,351-373
Sequence
Target Sequence 
>C. ELEGANS:192142_AT
aagctgttcgtattatggatcatgtggtttttcgttgctgtttgtggatttgcaaatgat
ttgaattcaaacagtcttgccggaaacctttacttgaatcaagcgttattcggtatatta
cttgtgctgtcaaaaattgtactgctttttgtggataccaaatttgaaaactttaaacgg
agaacgttgcatcaaggatcacaatccggaatgataattagctttctcattttagcaata
tttttatggattgactatcatggaacaggtttcctaatcgtttacctttttggaacaatg
ttcatcgaatacacatgggatgctgtatatctttgtgctattgaatcgatggaaacttct
tctcgagcaagtgcagttggctcatgttcattaatggctagaattggtagtcttttggca
ccatttcttacttatgcaaacacgtggtggcccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCTGTTCGTATTATGGATCATGT 641 149 622 Antisense
GGATCATGTGGTTTTTCGTTGCTGT 702 511 638 Antisense
CAGTCTTGCCGGAAACCTTTACTTG 155 59 693 Antisense
ATTCGGTATATTACTTGTGCTGTCA 547 9 729 Antisense
ATTGTACTGCTTTTTGTGGATACCA 242 5 757 Antisense
GAACGTTGCATCAAGGATCACAATC 467 347 803 Antisense
GGGATGCTGTATATCTTTGTGCTAT 103 497 938 Antisense
GGAAACTTCTTCTCGAGCAAGTGCA 569 527 972 Antisense
AAGTGCAGTTGGCTCATGTTCATTA 422 157 990 Antisense
GTAGTCTTTTGGCACCATTTCTTAC 153 457 1028 Antisense
ACTTATGCAAACACGTGGTGGCCCC 321 101 1051 Antisense
Sequence Source Affymetrix Proprietary Database