[Home] | [Total List]

[192141_at] transcriptional repressor like

Description T21B10.5 /REP_DB=WormBase Gene ID /WP=CE23994 /TR=Q22626 /GB=CAA92695.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=transcriptional repressor like
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 97      4grp_highest_8_8 > 37      4grp_high_8_8 > 01      6grp_highest_nonorm > 95      6grp_total > 96      4grp_total > 07      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 223
1 2 3 4 range
A 453.9
(0)
P 		408.6
(-3)
P 		498.4
(3)
P 		458.7
(0.3)
P 		90
B 475
(-2.5)
P 		481.9
(-2.1)
P 		465.7
(-3)
P 		579.3
(3)
P 		114
C 631.9
(3)
P 		528.2
(-3)
P 		545.3
(-2)
P 		579.6
(-0)
P 		104
avr 520.3
(1.3) 		472.9
(-3) 		503.1
(-0.3) 		539.2
(3) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 613
1 2 3 4 5 6 range
A 393.7
(-3)
P 		613.2
(-0.9)
P 		683.5
(-0.2)
P 		679.3
(-0.2)
P 		906.6
(2)
P 		1006.8
(3)
P 		613
B 534.3
(-3)
P 		705.9
(-0.6)
P 		589.3
(-2.2)
P 		798.3
(0.7)
P 		814.4
(0.9)
P 		964.5
(3)
P 		430
C 530.3
(-3)
P 		808
(1.1)
P 		594.1
(-2.1)
P 		785.9
(0.8)
P 		905.8
(2.5)
P 		936.3
(3)
P 		406
avr 486.1
(-3) 		709
(-0.2) 		622.3
(-1.3) 		754.5
(0.3) 		875.6
(1.8) 		969.2
(3) 		483
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 142
1 2 3 4 range
A 165.3
(3)
P 		88.7
(-1.7)
P 		130.3
(0.9)
P 		67.1
(-3)
P 		98
B 151.5
(3)
P 		119
(-1.5)
P 		107.9
(-3)
P 		123.5
(-0.9)
P 		44
C 209.2
(3)
P 		151.8
(-0.1)
P 		190.1
(2)
P 		97.7
(-3)
P 		112
avr 175.3
(3) 		119.8
(-1.2) 		142.8
(0.5) 		96.1
(-3) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 287
1 2 3 4 5 6 range
A 72.6
(-3)
P 		218.1
(1.3)
P 		148.9
(-0.7)
P 		172.3
(-0)
P 		273.6
(3)
P 		245.1
(2.1)
P 		201
B 185.9
(-1.8)
P 		235
(-0.5)
P 		143.1
(-3)
P 		211.4
(-1.1)
P 		330.9
(2.2)
P 		359.6
(3)
P 		217
C 196.6
(-1.3)
P 		246.6
(0.5)
P 		151.2
(-3)
P 		158
(-2.7)
P 		293.1
(2.2)
P 		313.4
(3)
P 		162
avr 151.7
(-2.8) 		233.2
(0.2) 		147.7
(-3) 		180.6
(-1.8) 		299.2
(2.7) 		306
(3) 		158
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192141_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3304
Sequence Type Exemplar sequence
Representative Public ID T21B10.5 NCBI
Target Description T21B10.5 /REP_DB=WormBase Gene ID /WP=CE23994 /TR=Q22626 /GB=CAA92695.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=transcriptional repressor like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063501(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063501 NCBI Caenorhabditis elegans T21B10.5 (T21B10.5) mRNA, complete cds. 11/11 None
SNAP00000044366 ENSEMBL cdna:SNAP chromosome:CEL140:II:8939347:8940362:-1 9/11 None
GENEFINDER00000044369 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8939347:8940362:-1 11/11 None
T21B10.5 ENSEMBL cdna:known chromosome:CEL140:II:8938960:8940398:-1 gene:T21B10.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8939343-8940395(-) 100.0 100.0
Public Domain and Genome References
Gene Title transcriptional repressor like
Ensembl T21B10.5
Entrez Gene 174425 Entrez gene
SwissProt Q22626 EMBL-EBI
WormBase CE23994 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92695 Hypothetical protein T21B10.5 [Caenorhabditis elegans] ref|NP_495902.1| T21B10.5 [Caenorhabditis elegans] 1.0E-160
blast CAA92695 Hypothetical protein T21B10.5 [Caenorhabditis elegans] ref|NP_495902.1| T21B10.5 [Caenorhabditis elegans] 1.0E-152
blast CAA92695 Hypothetical protein T21B10.5 [Caenorhabditis elegans] ref|NP_495902.1| T21B10.5 [Caenorhabditis elegans] 1.0E-129
blast CAE59764 Hypothetical protein CBG03216 [Caenorhabditis briggsae] 1.0E-112
blast CAE59764 Hypothetical protein CBG03216 [Caenorhabditis briggsae] 2.0E-91
blast XP_344848 PREDICTED: similar to PR-domain zinc finger protein 9 [Rattus norvegicus] 6.0E-30
blast XP_344848 PREDICTED: similar to PR-domain zinc finger protein 9 [Rattus norvegicus] 7.0E-30
Protein Domains
Database ID Description E-Value
Pfam IPR001214 EMBL-EBI Nuclear protein SET 2.5E-7
Pfam IPR001214 EMBL-EBI Nuclear protein SET 7.7E-16
Pfam IPR001214 EMBL-EBI Nuclear protein SET 7.7E-16
Sequence
Target Sequence 
>C. ELEGANS:192141_AT
gaaaatctcgacattcattgtgacaaatgcaacaagttttatcgcccatattgtcgtctg
catccactattcaaaattcccgatcgtgtcttgaaacgtgatgaaagctcgaacttatcg
ttctcgcaacaaactctgccaatccttttccgcatcgaagaatcaaagttgccgaatgcc
ggattaggagtgattgctgaagtgtttattccagttggaatggtatttggtccgtataaa
ggtcgccgctgtcagaaaaaaacagatttctacaaagatggatatgcttggcttattaaa
agtggtgataagcgattctacattgatggatccgacgccgagcgatctaattggctgaga
tatattaatagtccacgattcgaagatgagcagaatatgttggcattccagacaaatgga
aaaattttctaccgtgtaatcaagccaatcagaattaaccaggaattgctcgtttggtat
ggatcttcctat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAATCTCGACATTCATTGTGACA 328 353 268 Antisense
CAAGTTTTATCGCCCATATTGTCGT 465 183 300 Antisense
AATTCCCGATCGTGTCTTGAAACGT 33 179 342 Antisense
AGCTCGAACTTATCGTTCTCGCAAC 455 75 373 Antisense
GTTCTCGCAACAAACTCTGCCAATC 421 443 387 Antisense
CCAATCCTTTTCCGCATCGAAGAAT 101 277 406 Antisense
CCGTATAAAGGTCGCCGCTGTCAGA 416 259 499 Antisense
CTACATTGATGGATCCGACGCCGAG 66 225 585 Antisense
GACGCCGAGCGATCTAATTGGCTGA 108 381 601 Antisense
TCTACCGTGTAATCAAGCCAATCAG 640 613 695 Antisense
GCTCGTTTGGTATGGATCTTCCTAT 627 293 735 Antisense
Sequence Source Affymetrix Proprietary Database