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[192140_at] Human M130 antigen like protein

Description C06B8.7 /REP_DB=WormBase Gene ID /WP=CE07975 /TR=O17575 /GB=CAB03852.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Human M130 antigen like protein
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 99      4grp_highest_8_8 > 34      4grp_high_8_8 > 57      6grp_highest_nonorm > 91      6grp_total > 95      4grp_total > 63      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 232.4
(3)
P 		207.9
(0.9)
P 		230
(2.8)
P 		162.7
(-3)
P 		70
B 223.6
(1.9)
P 		198.2
(-0)
P 		237.9
(3)
P 		159.5
(-3)
P 		78
C 218.5
(3)
P 		158.2
(-3)
P 		195.5
(0.7)
P 		201
(1.3)
P 		60
avr 224.8
(3) 		188.1
(-1.4) 		221.1
(2.6) 		174.4
(-3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 268
1 2 3 4 5 6 range
A 214.3
(-0.5)
P 		248.5
(0.6)
P 		129.3
(-3)
P 		256.4
(0.8)
P 		316.3
(2.6)
P 		330
(3)
P 		201
B 198.1
(-0.3)
P 		203.1
(-0.2)
P 		108.2
(-3)
P 		267
(1.7)
P 		270.3
(1.8)
P 		310.7
(3)
P 		203
C 193.2
(-2.2)
P 		187.3
(-2.3)
P 		164.1
(-3)
P 		252.7
(-0.5)
P 		376.1
(3)
P 		205.7
(-1.8)
P 		212
avr 201.9
(-0.8) 		213
(-0.5) 		133.9
(-3) 		258.7
(1) 		320.9
(3) 		282.1
(1.8) 		187
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 84.6
(3)
P 		45.1
(-0.9)
P 		60.1
(0.6)
P 		23.8
(-3)
P 		61
B 71.3
(3)
P 		48.9
(-0.6)
P 		55.1
(0.4)
P 		34
(-3)
P 		37
C 72.3
(3)
P 		45.5
(-1.2)
P 		68.2
(2.4)
P 		33.9
(-3)
P 		38
avr 76.1
(3) 		46.5
(-0.9) 		61.1
(1) 		30.6
(-3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 39.5
(-2)
P 		88.4
(2.4)
P 		28.2
(-3)
P 		65
(0.3)
P 		95.4
(3)
P 		80.4
(1.7)
P 		67
B 68.9
(-0.1)
P 		67.6
(-0.2)
P 		26.3
(-3)
P 		70.7
(-0)
P 		109.8
(2.6)
P 		115.8
(3)
P 		90
C 71.6
(-0.8)
P 		57.1
(-1.9)
P 		41.8
(-3)
P 		50.8
(-2.3)
P 		121.7
(3)
P 		68.8
(-1)
P 		80
avr 60
(-0.8) 		71
(0) 		32.1
(-3) 		62.2
(-0.7) 		109
(3) 		88.3
(1.4) 		77
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192140_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14748
Sequence Type Exemplar sequence
Representative Public ID C06B8.7 NCBI
Target Description C06B8.7 /REP_DB=WormBase Gene ID /WP=CE07975 /TR=O17575 /GB=CAB03852.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Human M130 antigen like protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074458(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074458 NCBI Caenorhabditis elegans C06B8.7 (C06B8.7) mRNA, complete cds. 11/11 None
SNAP00000044324 ENSEMBL cdna:SNAP chromosome:CEL140:V:15508064:15513817:1 11/11 None
GENEFINDER00000044334 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15501328:15513817:1 11/11 None
C06B8.7 ENSEMBL cdna:known chromosome:CEL140:V:15501328:15513997:1 gene:C06B8.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15501327-15513817(+) 100.0 100.0
Public Domain and Genome References
Gene Title Human M130 antigen like protein
Ensembl C06B8.7
Entrez Gene 246012 Entrez gene
SwissProt O17575 EMBL-EBI
WormBase CE30854 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1634283_AT dm
DROSGENOME1:145739_AT dm
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4866 endopeptidase inhibitor activity inferred from electronic annotation QuickGO AmiGO
5044 scavenger receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03852 Hypothetical protein C06B8.7 [Caenorhabditis elegans] ref|NP_506859.2| C06B8.7 [Caenorhabditis elegans] 0.0
blast CAE71617 Hypothetical protein CBG18580 [Caenorhabditis briggsae] 0.0
blast EAA15063 ENSANGP00000021503 [Anopheles gambiae str. PEST] ref|XP_319903.2| ENSANGP00000021503 [Anopheles gambiae str. PEST] 1.0E-179
Protein Domains
Database ID Description E-Value
Pfam IPR001190 EMBL-EBI Speract/scavenger receptor 6.8E-5
Pfam IPR001190 EMBL-EBI Speract/scavenger receptor 3.2E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506859.2 1 2831-2853
C06B8.7 1 2831-2853
SNAP00000044324 1 1122-1144
GENEFINDER00000044334 1 2831-2853
Sequence
Target Sequence 
>C. ELEGANS:192140_AT
gaacacctactcatatgcctatactccacatgggggcccgacagccagctataacacacg
accatcccgctcggtgtccacaaatccaaacggttactcggaaatcacccatcctacagt
aacccagaccacaactacagtaccctatcgatccacgtcatcacctaacaaccacgtcag
aatgcgaccatatcagccacgcagtgatactgcttcgaacgccacgttgtcatacactac
agactctgaacgtacatcgactgcgactgatctttcgagttcttatacatcggatgcatc
tgaaagtaccgtacagagtactgtagtgaataaaagacggtcaccccagccgccagtatc
ccccattccaagagcacccccgctcagaaattccaacggatttttggccagtactaacaa
ttttcaaccattgccaacggatattccgatgagatcggatccggaacttaatcattttgt
cgaacttcacgctgcaccacgcactggaggatctattcgcttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACACCTACTCATATGCCTATACT 607 351 8571 Antisense
CGCTCGGTGTCCACAAATCCAAACG 57 245 8638 Antisense
TTACTCGGAAATCACCCATCCTACA 128 683 8664 Antisense
CACAACTACAGTACCCTATCGATCC 258 195 8700 Antisense
CATCACCTAACAACCACGTCAGAAT 36 213 8729 Antisense
GTCAGAATGCGACCATATCAGCCAC 380 465 8746 Antisense
GCAGTGATACTGCTTCGAACGCCAC 394 311 8771 Antisense
GACTCTGAACGTACATCGACTGCGA 27 373 8812 Antisense
GACTGCGACTGATCTTTCGAGTTCT 180 375 8829 Antisense
TCATTTTGTCGAACTTCACGCTGCA 134 619 9042 Antisense
ACGCACTGGAGGATCTATTCGCTTC 417 91 9069 Antisense
Sequence Source Affymetrix Proprietary Database