[Home] | [Total List]

[192139_s_at] UNC-7 protein like

Description F13G3.8 /REP_DB=WormBase Gene ID /WP=CE05620 /GEN=eat-5 /TR=SW:Q27295 /GB=CAA95793.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=UNC-7 protein like
Cluster 6grp_high1_10_10 > 04      4grp_highest_8_8 > 61      4grp_high_8_8 > 18      6grp_total > 15      4grp_total > 30      6grp_cgc > 33      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 144.7
(1.9)
P 		97.7
(-0.6)
P 		51.5
(-3)
P 		166.7
(3)
P 		115
B 162.3
(3)
P 		81.1
(-1.6)
P 		69.7
(-2.2)
P 		56.1
(-3)
P 		106
C 121.9
(2.1)
P 		104.2
(0.4)
P 		67.2
(-3)
P 		131.7
(3)
P 		65
avr 143
(3) 		94.3
(-0.6) 		62.8
(-3) 		118.2
(1.1) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 115
1 2 3 4 5 6 range
A 127.1
(3)
P 		100
(1.5)
P 		94.6
(1.2)
P 		39.3
(-1.8)
P 		57.3
(-0.8)
P 		18.1
(-3)
A 		109
B 126.3
(3)
P 		120.6
(2.7)
P 		86.3
(0.6)
P 		27.4
(-3)
A 		55.6
(-1.3)
P 		27.8
(-3)
P 		99
C 101.6
(1.2)
P 		133
(3)
P 		58.2
(-1.2)
P 		59.9
(-1.1)
P 		25.4
(-3)
M 		50.7
(-1.6)
P 		108
avr 118.3
(3) 		117.9
(3) 		79.7
(0.3) 		42.2
(-2.3) 		46.1
(-2) 		32.2
(-3) 		86
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 52.7
(3)
P 		21.2
(-1.8)
P 		13.5
(-3)
P 		24.4
(-1.3)
P 		39
B 51.7
(3)
P 		20
(-1.8)
P 		16.1
(-2.4)
P 		12
(-3)
P 		40
C 40.4
(3)
P 		30
(-0.4)
P 		23.4
(-2.6)
P 		22.2
(-3)
P 		18
avr 48.3
(3) 		23.7
(-1.8) 		17.7
(-3) 		19.5
(-2.6) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 23.4
(0.7)
P 		35.6
(3)
P 		20.6
(0.1)
P 		10
(-1.9)
P 		17.3
(-0.5)
P 		4.4
(-3)
A 		31
B 43.9
(3)
P 		40.1
(2.4)
P 		20.9
(-0.8)
P 		7.3
(-3)
A 		22.6
(-0.5)
P 		10.4
(-2.5)
P 		37
C 37.6
(2.4)
P 		40.6
(3)
P 		14.8
(-1.8)
P 		12
(-2.3)
P 		8.2
(-3)
M 		17
(-1.4)
P 		32
avr 35
(2.2) 		38.8
(3) 		18.8
(-1.1) 		9.8
(-3) 		16
(-1.7) 		10.6
(-2.8) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192139_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2360
Sequence Type Exemplar sequence
Representative Public ID F13G3.8 NCBI
Target Description F13G3.8 /REP_DB=WormBase Gene ID /WP=CE05620 /GEN=eat-5 /TR=SW:Q27295 /GB=CAA95793.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=UNC-7 protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059667(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059667 NCBI Caenorhabditis elegans EATing: abnormal pharyngeal pumping family member (eat-5) (eat-5) mRNA, complete cds. 11/11 None
SNAP00000006944 ENSEMBL cdna:SNAP chromosome:CEL140:I:7316836:7319846:-1 9/11 None
F13G3.8 ENSEMBL cdna:known chromosome:CEL140:I:7316773:7320069:-1 gene:F13G3.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000006948 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7316766-7319795(-) 100.0 100.0
Public Domain and Genome References
Gene Title UNC-7 protein like
Gene Symbol eat-5
Ensembl F13G3.8
Entrez Gene 172480 Entrez gene
SwissProt Q27295 EMBL-EBI
WormBase CE05620 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5921 gap junction inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA95793 Hypothetical protein F13G3.8 [Caenorhabditis elegans] ref|NP_492068.1| EATing: abnormal pharyngeal pumping family member (eat-5) [Caenorhabditis elegans] sp|Q27295|EAT5_CAEEL Innexin eat-5 gb|AAB09669.1| EAT-5 0.0
blast CAE66751 Hypothetical protein CBG12101 [Caenorhabditis briggsae] 0.0
blast AAN71842 Innexin protein 1, isoform a [Caenorhabditis elegans] ref|NP_741826.1| INneXin family member (inx-1) [Caenorhabditis elegans] gb|AAB09671.1| transmembrane protein 8.0E-78
blast T28798 hypothetical protein C16E9.4 - Caenorhabditis elegans 1.0E-72
Protein Domains
Database ID Description E-Value
Pfam IPR000990 EMBL-EBI Innexin 1.0E-126
Pfam IPR000990 EMBL-EBI Innexin 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492068.1 3 23-45,100-122,277-299
F13G3.8 3 23-45,100-122,277-299
SNAP00000006944 4 17-39,94-116,184-206,271-293
Sequence
Target Sequence 
>C. ELEGANS:192139_S_AT
gggccaaaacgatccatactggggaatgcgaattttagatgatattctgaaaggaaccga
ctgggaacattctggaaattttccacgtattgctatgtgtgattttcaggtcagagtgct
tggaaatttgcaacgatattcgattcaatgcgtgcttactttgaatatgttcaacgaaaa
gatctttctcttcttgtatatttggttccttctcgtcttctttgtcacattgtttgattc
aattttcttgtgttataacatgttcagcagtcacaaacttgttgaattcttgcagcaatt
tcttgacaatcaggaccaagatgaaaatgacgaaaagaagccggaagaaagaaaagttta
cagaaaagagcaacattcgattctgctgtcagaattctgtcttcataagtttactcctga
tattattattctgctcaaaatgataaacaatcatacgggagatatcgtttgcactgaaat
tgtaggcaggatgtggaacgaatttttagaacgtgatgcaaagttagtgttgcaacgatt
cgttgataatgaccaccacat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGCCAAAACGATCCATACTGGGGA 542 287 660 Antisense
GGAACCGACTGGGAACATTCTGGAA 264 529 712 Antisense
GGAAATTTTCCACGTATTGCTATGT 550 525 733 Antisense
TATTCGATTCAATGCGTGCTTACTT 697 663 796 Antisense
GATCTTTCTCTTCTTGTATATTTGG 533 419 840 Antisense
TTGTATATTTGGTTCCTTCTCGTCT 365 703 853 Antisense
ACATGTTCAGCAGTCACAAACTTGT 275 105 917 Antisense
TCTGCTGTCAGAATTCTGTCTTCAT 534 609 1041 Antisense
CTGTCTTCATAAGTTTACTCCTGAT 222 239 1056 Antisense
GGGAGATATCGTTTGCACTGAAATT 599 495 1116 Antisense
GATTCGTTGATAATGACCACCACAT 233 433 1196 Antisense
Sequence Source Affymetrix Proprietary Database