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[192138_at] serine/threonine-protein kinase

Description B0207.7 /REP_DB=WormBase Gene ID /WP=CE07685 /TR=O01429 /GB=AAB52455.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=serine-threonine-protein kinase
Cluster 6grp_total > 97      4grp_total > 10      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 155
1 2 3 4 range
A 12.5
(-2.7)
A 		26.3
(-2.1)
A 		3.7
(-3)
A 		158.7
(3)
A 		155
B 8.4
(-3)
A 		21.7
(-1.6)
A 		14.9
(-2.3)
A 		63.8
(3)
A 		55
C 14.7
(-2.7)
A 		9.4
(-3)
A 		12.8
(-2.8)
A 		118.4
(3)
A 		109
avr 11.9
(-2.9) 		19.1
(-2.5) 		10.5
(-3) 		113.6
(3) 		103

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 17.2
(-1.8)
A 		4.9
(-3)
A 		66.6
(3)
A 		10.1
(-2.5)
A 		21.4
(-1.4)
A 		51.7
(1.6)
A 		62
B 13.4
(-2.5)
A 		5.2
(-3)
A 		35.1
(-1)
A 		12
(-2.5)
A 		89.4
(2.6)
A 		95.5
(3)
P 		90
C 3.9
(-3)
A 		25.9
(-1)
A 		6.6
(-2.8)
A 		62.5
(2.3)
A 		60.8
(2.2)
A 		70
(3)
A 		66
avr 11.5
(-3) 		12
(-3) 		36.1
(-0.6) 		28.2
(-1.4) 		57.2
(1.5) 		72.4
(3) 		61
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 4.5
(-2.1)
A 		5.7
(-1.7)
A 		1
(-3)
A 		23.2
(3)
A 		22
B 2.7
(-3)
A 		5.4
(-1.5)
A 		3.4
(-2.6)
A 		13.6
(3)
A 		11
C 4.9
(-2.2)
A 		2.7
(-3)
A 		4.5
(-2.4)
A 		20
(3)
A 		17
avr 4
(-2.6) 		4.6
(-2.4) 		3
(-3) 		18.9
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 3.2
(-2.3)
A 		1.8
(-3)
A 		14.5
(3)
A 		2.6
(-2.6)
A 		6.5
(-0.8)
A 		12.6
(2.1)
A 		13
B 4.7
(-2.5)
A 		1.7
(-3)
A 		8.5
(-1.8)
A 		3.2
(-2.7)
A 		36.3
(3)
A 		35.6
(2.9)
P 		35
C 1.4
(-3)
A 		7.9
(-1.2)
A 		1.7
(-2.9)
A 		12.6
(0.1)
A 		19.7
(2)
A 		23.4
(3)
A 		22
avr 3.1
(-3) 		3.8
(-2.8) 		8.2
(-1.5) 		6.1
(-2.1) 		20.8
(2.1) 		23.9
(3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192138_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.973
Sequence Type Exemplar sequence
Representative Public ID B0207.7 NCBI
Target Description B0207.7 /REP_DB=WormBase Gene ID /WP=CE07685 /TR=O01429 /GB=AAB52455.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=serine-threonine-protein kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059315(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059315 NCBI Caenorhabditis elegans B0207.7 (B0207.7) mRNA, complete cds. 11/11 None
SNAP00000009174 ENSEMBL cdna:SNAP chromosome:CEL140:I:5953892:5956328:-1 11/11 None
GENEFINDER00000009187 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5953892:5955477:-1 11/11 None
B0207.7 ENSEMBL cdna:known chromosome:CEL140:I:5953892:5955477:-1 gene:B0207.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5953891-5955477(-) 100.0 100.0
Public Domain and Genome References
Gene Title serine/threonine-protein kinase
Ensembl B0207.7
Entrez Gene 181836 Entrez gene
SwissProt O01429 EMBL-EBI
WormBase CE07685 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB52455 Hypothetical protein B0207.7 [Caenorhabditis elegans] ref|NP_491716.1| B0207.7 [Caenorhabditis elegans] 0.0
blast CAE60426 Hypothetical protein CBG04032 [Caenorhabditis briggsae] 1.0E-147
blast CAA99911 Hypothetical protein R90.1 [Caenorhabditis elegans] ref|NP_506224.1| R90.1 [Caenorhabditis elegans] 2.0E-36
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 1.2E-15
Pfam IPR000719 EMBL-EBI Protein kinase 1.2E-15
Sequence
Target Sequence 
>C. ELEGANS:192138_AT
agacccttctactaacacaatgcgtcatcgagctgctcgcaaaacaccaggattcatggg
caccagcaattactgtagcacgtatgcacatgatgaatgtgatcagggaagacgagatga
tttgtgggcgtggctttactcaactgttgaaatgttccttggaagccttccatggaataa
cgaggataaaacaattttggttagcaagatgaagaaaaagattggcaaaaaattattttt
caaatgtccacgcgagattgctcttatgtatgaacatattcgccaacttaaatttgactc
aactcctgactaccaaatgatgctcaaccatttccaacaaatgtatgcccgtcttgaaat
tgatgaatctgaaccaatggattttgaagaaggatctgcgttctatgaagaacattttct
aaacaatgatacggattcggaagaagatacggatgacactacaacagatttggatagtta
tgaaaatgagaaatcaaatgttgtcacaattggaactgaaagtgatgccactcaggaaga
taagaaattggggagacttgccgctggac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGACCCTTCTACTAACACAATGCGT 216 71 531 Antisense
CACAATGCGTCATCGAGCTGCTCGC 174 195 546 Antisense
GAGCTGCTCGCAAAACACCAGGATT 515 387 560 Antisense
GGGCACCAGCAATTACTGTAGCACG 607 493 588 Antisense
GCGTGGCTTTACTCAACTGTTGAAA 409 293 658 Antisense
GAAATGTTCCTTGGAAGCCTTCCAT 536 361 679 Antisense
ATGTCCACGCGAGATTGCTCTTATG 95 49 774 Antisense
GACTCAACTCCTGACTACCAAATGA 480 371 826 Antisense
ATGATGCTCAACCATTTCCAACAAA 302 47 847 Antisense
TCCAACAAATGTATGCCCGTCTTGA 696 587 863 Antisense
AAATTGGGGAGACTTGCCGCTGGAC 175 115 1075 Antisense
Sequence Source Affymetrix Proprietary Database