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[192134_at] SCP-like extracellular Proteins

Description T05A10.4 /REP_DB=WormBase Gene ID /WP=CE13187 /TR=P90959 /GB=CAA92137.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=SCP-like extracellular Proteins
Cluster 6grp_total > 93      4grp_total > 04      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 48.8
(0.6)
A 		16.4
(-3)
A 		34.4
(-1)
A 		70.2
(3)
A 		54
B 20.3
(-3)
A 		40.3
(3)
A 		27.1
(-1)
A 		24.9
(-1.6)
A 		20
C 31.1
(-1.1)
A 		23.3
(-3)
A 		24.3
(-2.8)
A 		48
(3)
A 		25
avr 33.4
(-1.1) 		26.7
(-3) 		28.6
(-2.5) 		47.7
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 348
1 2 3 4 5 6 range
A 14.4
(-3)
A 		40.2
(-2.4)
A 		26.1
(-2.7)
A 		84
(-1.4)
P 		282.4
(3)
P 		43.9
(-2.3)
A 		268
B 21.3
(-2.6)
A 		33.5
(-2.3)
A 		6
(-3)
A 		69.8
(-1.5)
P 		254.1
(3)
P 		41
(-2.2)
A 		248
C 9.9
(-2.9)
A 		37.9
(-2.4)
A 		2.4
(-3)
A 		63.9
(-1.9)
A 		350.8
(3)
P 		48.9
(-2.2)
A 		348
avr 15.2
(-2.9) 		37.2
(-2.5) 		11.5
(-3) 		72.6
(-1.7) 		295.8
(3) 		44.6
(-2.3) 		284
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 17.8
(3)
A 		3.6
(-3)
A 		9
(-0.7)
A 		10.3
(-0.2)
A 		14
B 6.5
(-1.5)
A 		10
(3)
A 		6.3
(-1.7)
A 		5.3
(-3)
A 		5
C 10.3
(3)
A 		6.7
(-3)
A 		8.5
(-0)
A 		8.1
(-0.7)
A 		4
avr 11.5
(3) 		6.8
(-3) 		7.9
(-1.6) 		7.9
(-1.6) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 113
1 2 3 4 5 6 range
A 2.6
(-3)
A 		14.3
(-2.2)
A 		5.7
(-2.8)
A 		21.3
(-1.6)
P 		85.2
(3)
P 		10.7
(-2.4)
A 		83
B 7.4
(-2.6)
A 		11.2
(-2.4)
A 		1.4
(-3)
A 		18.5
(-2)
P 		103.2
(3)
P 		15.3
(-2.2)
A 		102
C 3.7
(-2.8)
A 		11.6
(-2.4)
A 		0.6
(-3)
A 		12.8
(-2.4)
A 		113.5
(3)
P 		16.4
(-2.2)
A 		113
avr 4.6
(-2.9) 		12.4
(-2.4) 		2.6
(-3) 		17.5
(-2.1) 		100.6
(3) 		14.1
(-2.3) 		98
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192134_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16755
Sequence Type Exemplar sequence
Representative Public ID T05A10.4 NCBI
Target Description T05A10.4 /REP_DB=WormBase Gene ID /WP=CE13187 /TR=P90959 /GB=CAA92137.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=SCP-like extracellular Proteins
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077402(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077402 NCBI Caenorhabditis elegans T05A10.4 (T05A10.4) mRNA, complete cds. 11/11 None
SNAP00000000838 ENSEMBL cdna:SNAP chromosome:CEL140:X:10789605:10791950:-1 11/11 None
GENEFINDER00000000844 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10789605:10792458:-1 11/11 None
T05A10.4 ENSEMBL cdna:known chromosome:CEL140:X:10790773:10791941:-1 gene:T05A10.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10790772-10791941(-) 100.0 100.0
Public Domain and Genome References
Gene Title SCP-like extracellular Proteins
Ensembl T05A10.4
Entrez Gene 188096 Entrez gene
SwissProt P90959 EMBL-EBI
WormBase CE13187 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92136 Hypothetical protein T05A10.5 [Caenorhabditis elegans] ref|NP_509802.1| T05A10.5 [Caenorhabditis elegans] 1.0E-152
blast CAE70821 Hypothetical protein CBG17592 [Caenorhabditis briggsae] 1.0E-144
blast CAA92137 Hypothetical protein T05A10.4 [Caenorhabditis elegans] ref|NP_509803.1| T05A10.4 [Caenorhabditis elegans] 1.0E-130
blast CAA92137 Hypothetical protein T05A10.4 [Caenorhabditis elegans] ref|NP_509803.1| T05A10.4 [Caenorhabditis elegans] 1.0E-129
blast CAE70820 Hypothetical protein CBG17591 [Caenorhabditis briggsae] 1.0E-114
Protein Domains
Database ID Description E-Value
Pfam IPR001283 EMBL-EBI Allergen V5/Tpx-1 related 7.6E-28
Pfam IPR001283 EMBL-EBI Allergen V5/Tpx-1 related 7.6E-28
Pfam IPR001283 EMBL-EBI Allergen V5/Tpx-1 related 7.6E-58
Pfam IPR001283 EMBL-EBI Allergen V5/Tpx-1 related 7.6E-28
Pfam IPR001283 EMBL-EBI Allergen V5/Tpx-1 related 7.6E-58
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000000844 1 26-48
Sequence
Target Sequence 
>C. ELEGANS:192134_AT
gaactgctaaccgaacatgtgtgtaacaaatcaacgatcactcagctacagcaggagatc
atcttgacaacccacaatgaattacgaagatcattggctttcggaaagcaaagaaacaag
agaggtctcatgaacggtgcgagaaatatgtataaactggattgggattgtgaactggca
tcacttgcagccaattggtcaacctcctgccctcagcactttatgccgcaatcggtactt
ggctccaacgctcagctttttaagcgtttctatttttattttgatgggcacgactctact
gtacatatgcgaaacgcgatgaagtattggtggcagcaaggtgaagaaaaaggcaatgag
gatcagaaaaatagattctatgccagacgaaattattttggatgggcaaacatggcaaaa
ggaaaaacatatcgagttggatgctcgtatattatgtgcggcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACTGCTAACCGAACATGTGTGTA 111 349 172 Antisense
AATCAACGATCACTCAGCTACAGCA 132 171 200 Antisense
CAGGAGATCATCTTGACAACCCACA 161 209 223 Antisense
AAGAGAGGTCTCATGAACGGTGCGA 13 155 289 Antisense
GTGAACTGGCATCACTTGCAGCCAA 32 481 341 Antisense
TGCAGCCAATTGGTCAACCTCCTGC 326 577 357 Antisense
CCTCAGCACTTTATGCCGCAATCGG 97 269 382 Antisense
TATGCCGCAATCGGTACTTGGCTCC 299 657 393 Antisense
GGCTCCAACGCTCAGCTTTTTAAGC 480 539 412 Antisense
TGGGCACGACTCTACTGTACATATG 563 553 456 Antisense
GGATGCTCGTATATTATGTGCGGCG 704 513 610 Antisense
Sequence Source Affymetrix Proprietary Database