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[192133_s_at]

Description C36F7.4A /REP_DB=WormBase Gene ID /WP=CE24829 /TR=Q93350 /GB=CAB02817.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Drosophila amalgam protein like
Cluster 6grp_highest_10_10 > 71      6grp_high1_10_10 > 27      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_highest_nonorm > 80      6grp_total > 17      4grp_total > 46      6grp_highest_sub > De      6grp_cgc > 12      6grp_high1_sub > Cu      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 166
1 2 3 4 range
A 277.9
(3)
P 		169.9
(-1.2)
P 		122.7
(-3)
P 		149
(-2)
P 		155
B 285
(3)
P 		196.9
(-1)
P 		184.1
(-1.6)
P 		153.8
(-3)
P 		131
C 288.2
(3)
P 		191.8
(-1.9)
P 		169.6
(-3)
P 		202.1
(-1.4)
P 		119
avr 283.7
(3) 		186.2
(-1.7) 		158.8
(-3) 		168.3
(-2.5) 		125

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 286
1 2 3 4 5 6 range
A 386.2
(3)
P 		256.7
(-0.1)
P 		144
(-2.7)
P 		132.7
(-3)
P 		175.4
(-2)
P 		169.1
(-2.1)
P 		254
B 418.6
(3)
P 		255.1
(-0.5)
P 		184.2
(-2)
P 		134.9
(-3)
P 		140.5
(-2.9)
P 		168
(-2.3)
P 		284
C 325.9
(3)
P 		230.3
(-0.2)
P 		160.1
(-2.5)
P 		170.6
(-2.2)
P 		145.5
(-3)
P 		197.7
(-1.3)
P 		180
avr 376.9
(3) 		247.4
(-0.4) 		162.8
(-2.6) 		146.1
(-3) 		153.8
(-2.8) 		178.3
(-2.2) 		231
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 101.2
(3)
P 		36.9
(-1.9)
P 		32.1
(-2.2)
P 		21.8
(-3)
P 		79
B 90.9
(3)
P 		48.6
(-1.4)
P 		42.7
(-2)
P 		32.8
(-3)
P 		58
C 95.4
(3)
P 		55.1
(-0.9)
P 		59.1
(-0.6)
P 		34.1
(-3)
P 		61
avr 95.8
(3) 		46.9
(-1.4) 		44.6
(-1.6) 		29.6
(-3) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 114
1 2 3 4 5 6 range
A 71.2
(1)
P 		91.3
(3)
P 		31.4
(-3)
P 		33.6
(-2.8)
P 		52.9
(-0.8)
P 		41.2
(-2)
P 		60
B 145.7
(3)
P 		84.9
(-0.3)
P 		44.7
(-2.5)
P 		35.7
(-3)
P 		57.1
(-1.8)
P 		62.6
(-1.5)
P 		110
C 120.8
(3)
P 		70.3
(-0.5)
P 		40.7
(-2.6)
P 		34.3
(-3)
P 		47.1
(-2.1)
P 		66.2
(-0.8)
P 		87
avr 112.6
(3) 		82.2
(0.7) 		38.9
(-2.7) 		34.5
(-3) 		52.4
(-1.6) 		56.7
(-1.3) 		78
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192133_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1330
Sequence Type Exemplar sequence
Representative Public ID C36F7.4A NCBI
Target Description C36F7.4A /REP_DB=WormBase Gene ID /WP=CE24829 /TR=Q93350 /GB=CAB02817.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Drosophila amalgam protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060135(11), NM_060134(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060135 NCBI Caenorhabditis elegans neuRonal IGCAM family member (rig-5) (rig-5) mRNA, complete cds. 11/11 None
NM_060134 NCBI Caenorhabditis elegans neuRonal IGCAM family member (rig-5) (rig-5) mRNA, complete cds. 11/11 A 
GENEFINDER00000041486 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9573615:9579642:-1 11/11 None
C36F7.4a.1 ENSEMBL cdna:known chromosome:CEL140:I:9573581:9582292:-1 gene:C36F7.4 11/11 None
C36F7.4b ENSEMBL cdna:known chromosome:CEL140:I:9573586:9582500:-1 gene:C36F7.4 11/11 A 
C36F7.4a.2 ENSEMBL cdna:known chromosome:CEL140:I:9573615:9582310:-1 gene:C36F7.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000041480 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9573545-9582431(-) 100.0 100.0
Public Domain and Genome References
Ensembl C36F7.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54202 Hypothetical protein C36F7.4b [Caenorhabditis elegans] ref|NP_492535.1| neuRonal IGCAM family member (rig-5) [Caenorhabditis elegans] 0.0
blast CAB02817 Hypothetical protein C36F7.4a [Caenorhabditis elegans] ref|NP_492536.2| neuRonal IGCAM family member (rig-5) [Caenorhabditis elegans] 1.0E-162
blast CAB54202 Hypothetical protein C36F7.4b [Caenorhabditis elegans] ref|NP_492535.1| neuRonal IGCAM family member (rig-5) [Caenorhabditis elegans] 1.0E-157
blast CAB02817 Hypothetical protein C36F7.4a [Caenorhabditis elegans] ref|NP_492536.2| neuRonal IGCAM family member (rig-5) [Caenorhabditis elegans] 1.0E-155
Protein Domains
Database ID Description E-Value
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 7.2E-9
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 6.3E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.021
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 6.3E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.021
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 6.3E-6
Sequence
Target Sequence 
>C. ELEGANS:192133_S_AT
gcaagtgtgttccatggacctgttcttcatcttacaaaagtctcaagaaaacacatgagc
gagtatctttgtgttgcaagtaatggaattccacctgatgaatcttggactgtcaagctt
ttggttacatttcccccactcgttcaagctcaatctgaaacagtgcaagcaagtgttggc
tcaatggcaagaatggtttgcacaacagaagcatggccaagaccggaaatgggatgggaa
aaggatggagaaccagtttatgaaagtaacaatgttgcgatgacgcatactgtatctggt
caataccacagtgttcacattcttgaaattagaaatgttcaatcatctcattttggagtt
tatcggtgcgttgccaaaaatgacaatggaatccatcattcacaagtcactcttaatcag
atctctcacaatcatttcacaaactcgaatttaattccagaagagctccgagcaattcaa
gtggattcagccagtttcccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAAGTGTGTTCCATGGACCTGTTC 432 321 652 Antisense
GGACCTGTTCTTCATCTTACAAAAG 691 521 667 Antisense
GAGCGAGTATCTTTGTGTTGCAAGT 174 387 708 Antisense
CCACCTGATGAATCTTGGACTGTCA 457 273 742 Antisense
CCCACTCGTTCAAGCTCAATCTGAA 322 259 786 Antisense
GCGATGACGCATACTGTATCTGGTC 145 291 928 Antisense
AATACCACAGTGTTCACATTCTTGA 355 173 953 Antisense
GAGTTTATCGGTGCGTTGCCAAAAA 596 397 1007 Antisense
AATCCATCATTCACAAGTCACTCTT 226 167 1041 Antisense
CTCTCACAATCATTTCACAAACTCG 159 229 1074 Antisense
CAAGTGGATTCAGCCAGTTTCCCAT 30 183 1129 Antisense
Sequence Source Affymetrix Proprietary Database