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[192124_at] Zinc finger protein (C2H2 type)

Description T23F11.4 /REP_DB=WormBase Gene ID /WP=CE01097 /TR=Q22696 /GB=CAA86459.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Zinc finger protein (C2H2 type)
Cluster 6grp_highest_10_10 > 66      6grp_high1_10_10 > 75      4grp_highest_8_8 > 47      4grp_high_8_8 > 20      6grp_highest_nonorm > 81      6grp_total > 65      4grp_total > 20      6grp_highest_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 218
1 2 3 4 range
A 274.9
(-0.3)
P 		270.7
(-0.4)
P 		178
(-3)
P 		395.7
(3)
P 		218
B 222.8
(-0.6)
P 		225
(-0.4)
P 		181.7
(-3)
P 		282.7
(3)
P 		101
C 255.7
(1.4)
P 		240.2
(-0.6)
P 		220.3
(-3)
P 		269.1
(3)
P 		49
avr 251.1
(-0.2) 		245.3
(-0.5) 		193.3
(-3) 		315.8
(3) 		123

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 187
1 2 3 4 5 6 range
A 297.1
(3)
P 		262.8
(0.3)
P 		256.6
(-0.2)
P 		221.1
(-3)
P 		234.6
(-1.9)
P 		280.3
(1.7)
P 		76
B 231.2
(-1.5)
P 		206.2
(-3)
P 		237.9
(-1.1)
P 		291
(2.1)
P 		233.1
(-1.4)
P 		306.2
(3)
P 		100
C 171.3
(-2.5)
P 		270.8
(0.7)
P 		212.8
(-1.2)
P 		343.9
(3)
P 		156.8
(-3)
P 		326.4
(2.4)
P 		187
avr 233.2
(-1.4) 		246.6
(-0.6) 		235.8
(-1.3) 		285.3
(1.8) 		208.2
(-3) 		304.3
(3) 		96
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 100.1
(3)
P 		58.8
(-1.6)
P 		46.5
(-3)
P 		57.9
(-1.7)
P 		54
B 71
(3)
P 		55.6
(-0.2)
P 		42.1
(-3)
P 		60.2
(0.8)
P 		29
C 84.6
(3)
P 		69
(0.6)
P 		76.8
(1.8)
P 		45.4
(-3)
P 		39
avr 85.2
(3) 		61.1
(-1.7) 		55.1
(-2.9) 		54.5
(-3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 54.8
(-3)
P 		93.5
(3)
P 		55.9
(-2.8)
P 		56.1
(-2.8)
P 		70.8
(-0.5)
P 		68.2
(-0.9)
P 		39
B 80.5
(-0.6)
P 		68.6
(-1.9)
P 		57.8
(-3)
P 		77.1
(-0.9)
P 		94.7
(0.9)
P 		114.2
(3)
P 		56
C 63.5
(-1.7)
P 		82.6
(0.3)
P 		54.2
(-2.7)
P 		69.2
(-1.1)
P 		50.8
(-3)
P 		109.3
(3)
P 		59
avr 66.3
(-1.5) 		81.6
(0.7) 		56
(-3) 		67.5
(-1.3) 		72.1
(-0.7) 		97.2
(3) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192124_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7790
Sequence Type Exemplar sequence
Representative Public ID T23F11.4 NCBI
Target Description T23F11.4 /REP_DB=WormBase Gene ID /WP=CE01097 /TR=Q22696 /GB=CAA86459.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Zinc finger protein (C2H2 type)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065551(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065551 NCBI Caenorhabditis elegans T23F11.4 (T23F11.4) mRNA, complete cds. 11/11 None
SNAP00000039545 ENSEMBL cdna:SNAP chromosome:CEL140:III:4663515:4665322:-1 11/11 None
GENEFINDER00000039548 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4663515:4665322:-1 11/11 None
T23F11.4 ENSEMBL cdna:known chromosome:CEL140:III:4663214:4665322:-1 gene:T23F11.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4663514-4665322(-) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger protein (C2H2 type)
Ensembl T23F11.4
Entrez Gene 175612 Entrez gene
SwissProt Q22696 EMBL-EBI
WormBase CE01097 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA86459 Hypothetical protein T23F11.4 [Caenorhabditis elegans] ref|NP_497952.1| T23F11.4 [Caenorhabditis elegans] 1.0E-175
blast CAE71165 Hypothetical protein CBG18022 [Caenorhabditis briggsae] 1.0E-110
Sequence
Target Sequence 
>C. ELEGANS:192124_AT
gagcccgaagaagcttctgtcgaggatgatatcagtacggagtacatgcaaaatcaattg
atgcaggcgttgttcccaaagaatcagaatggcagtggcttggccaatttcgcgtcgtta
gaagacaacgagagcatcgaaggtgaatctggtggtttgtcggatcttggtgggttcaat
atggattcctcctcaccagcttcagctattcgttataagcctgcgtatgcgtcaacgaag
cgaggtgtctgccgtgtgtgtaatcgagaagtttctctgattacaactcatcgacgacga
cacgcaatcactcatttgggattcaaaacattgaaatgcgcgctgtgctacaagttcttc
agtcgacaggattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCCCGAAGAAGCTTCTGTCGAGG 199 385 397 Antisense
ATTGATGCAGGCGTTGTTCCCAAAG 345 3 453 Antisense
TTGGCCAATTTCGCGTCGTTAGAAG 204 705 496 Antisense
TGGTTTGTCGGATCTTGGTGGGTTC 572 549 549 Antisense
GGTTCAATATGGATTCCTCCTCACC 106 507 569 Antisense
AAGCCTGCGTATGCGTCAACGAAGC 460 149 613 Antisense
CGAGGTGTCTGCCGTGTGTGTAATC 214 249 637 Antisense
TACAACTCATCGACGACGACACGCA 655 641 678 Antisense
ACGACACGCAATCACTCATTTGGGA 33 93 693 Antisense
AAATGCGCGCTGTGCTACAAGTTCT 324 119 730 Antisense
ACAAGTTCTTCAGTCGACAGGATTT 57 115 746 Antisense
Sequence Source Affymetrix Proprietary Database