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[192123_at] yeast hypothetical L8167.6 like

Description C34E11.1 /REP_DB=WormBase Gene ID /WP=CE03062 /TR=Q18453 /GB=CAA91751.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=yeast hypothetical L8167.6 like
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 90      4grp_highest_8_8 > 22      4grp_high_8_8 > 06      6grp_highest_nonorm > 65      6grp_total > 91      4grp_total > 01      6grp_cgc > 97      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2641
1 2 3 4 range
A 983.3
(-2.5)
P 		829.5
(-3)
P 		1222.3
(-1.7)
P 		2614.7
(3)
P 		1785
B 1005.3
(-2.9)
P 		963.9
(-3)
P 		1134.3
(-2.6)
P 		3430.2
(3)
P 		2466
C 1007.4
(-2.4)
P 		789.4
(-3)
P 		941.5
(-2.6)
P 		2841.2
(3)
P 		2052
avr 998.7
(-2.6) 		860.9
(-3) 		1099.4
(-2.3) 		2962
(3) 		2101

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 842
1 2 3 4 5 6 range
A 929.6
(-3)
P 		1241.8
(1.1)
P 		1052.4
(-1.4)
P 		984.4
(-2.3)
P 		1392
(3)
P 		1107.9
(-0.7)
P 		462
B 1047.4
(-2.3)
P 		1321.9
(-0.3)
P 		960
(-3)
P 		1767.2
(3)
P 		1121.8
(-1.8)
P 		954.4
(-3)
P 		813
C 1353
(2.4)
P 		1399.2
(3)
P 		959.2
(-2.6)
P 		1027.7
(-1.7)
P 		1145.2
(-0.2)
P 		924.9
(-3)
P 		474
avr 1110
(-0.8) 		1321
(3) 		990.5
(-3) 		1259.8
(1.9) 		1219.7
(1.2) 		995.7
(-2.9) 		331
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 551
1 2 3 4 range
A 358
(2.3)
P 		180.1
(-3)
P 		319.5
(1.1)
P 		382.7
(3)
P 		203
B 320.6
(-2)
P 		238.1
(-3)
P 		262.8
(-2.7)
P 		731
(3)
P 		493
C 333.5
(-0.5)
P 		226.9
(-3)
P 		328.1
(-0.6)
P 		479.1
(3)
P 		252
avr 337.4
(-0.7) 		215
(-3) 		303.5
(-1.3) 		530.9
(3) 		316

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 330
1 2 3 4 5 6 range
A 171.4
(-3)
P 		441.7
(3)
P 		229.2
(-1.7)
P 		249.7
(-1.3)
P 		420
(2.5)
P 		269.7
(-0.8)
P 		270
B 364.4
(0.4)
P 		440
(2.3)
P 		233.1
(-3)
P 		468.1
(3)
P 		455.8
(2.7)
P 		355.9
(0.1)
P 		235
C 501.5
(3)
P 		427
(1.5)
P 		244.1
(-2.2)
P 		206.7
(-3)
P 		370.6
(0.3)
P 		309.6
(-0.9)
P 		295
avr 345.8
(0.3) 		436.2
(3) 		235.5
(-3) 		308.2
(-0.8) 		415.5
(2.4) 		311.7
(-0.7) 		201
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192123_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16669
Sequence Type Exemplar sequence
Representative Public ID C34E11.1 NCBI
Target Description C34E11.1 /REP_DB=WormBase Gene ID /WP=CE03062 /TR=Q18453 /GB=CAA91751.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=yeast hypothetical L8167.6 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077572(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077572 NCBI Caenorhabditis elegans RNAi Spreading Defective (see also sid) family member (rsd-3) (rsd-3) mRNA, complete cds. 11/11 None
SNAP00000030628 ENSEMBL cdna:SNAP chromosome:CEL140:X:11798448:11803192:1 11/11 None
GENEFINDER00000030633 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11798448:11803192:1 11/11 None
C34E11.1.2 ENSEMBL cdna:known chromosome:CEL140:X:11798423:11803565:1 gene:C34E11.1 11/11 None
C34E11.1.1 ENSEMBL cdna:known chromosome:CEL140:X:11798425:11803567:1 gene:C34E11.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11798447-11803192(+) 100.0 100.0
Public Domain and Genome References
Gene Title yeast hypothetical L8167.6 like
Gene Symbol rsd-3
Ensembl C34E11.1
Entrez Gene 181358 Entrez gene
SwissProt Q18453 EMBL-EBI
WormBase CE03062 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:251468_AT epsin N-terminal homology (ENTH) domain-containing protein at
CANINE:1604011_AT similar to Epsin-4 (Epsin-related protein) (EpsinR) (Enthoprotin) (Clathrin interacting protein localized in the trans-Golgi region) (Clint) cfa
CANINE:1588387_AT similar to Epsin-4 (Epsin-related protein) (EpsinR) (Enthoprotin) (Clathrin interacting protein localized in the trans-Golgi region) (Clint) cfa
CANINE_2:CFA.15301.1.S1_AT similar to Epsin-4 (Epsin-related protein) (EpsinR) (Enthoprotin) (Clathrin interacting protein localized in the trans-Golgi region) (Clint) cfa
CANINE_2:CFA.17659.1.S1_S_AT similar to Epsin-4 (Epsin-related protein) (EpsinR) (Enthoprotin) (Clathrin interacting protein localized in the trans-Golgi region) (Clint) cfa
CANINE_2:CFAAFFX.26536.1.S1_S_AT similar to Epsin-4 (Epsin-related protein) (EpsinR) (Enthoprotin) (Clathrin interacting protein localized in the trans-Golgi region) (Clint) cfa
DROSOPHILA_2:1636557_A_AT dm
DROSGENOME1:151866_AT dm
CHICKEN:GGAAFFX.11634.1.S1_S_AT similar to Epsin 4 (Epsin-related protein) (EpsinR) (Enthoprotin) (Clathrin interacting protein localized in the trans-Golgi region) (Clint) gga
HG-U133_PLUS_2:201769_AT enthoprotin hs
HG-U133A:201769_AT enthoprotin hs
HG-U133A_2:201769_AT enthoprotin hs
HG-U133A_2:201768_S_AT enthoprotin hs
HG-U133A:201768_S_AT enthoprotin hs
HG-U133_PLUS_2:201768_S_AT enthoprotin hs
HU35KSUBB:RC_AA028889_S_AT enthoprotin hs
HU35KSUBD:RC_H61566_F_AT enthoprotin hs
HUGENEFL:D79993_AT enthoprotin hs
U133_X3P:G7661967_3P_AT enthoprotin hs
U133_X3P:G13325306_3P_A_AT enthoprotin hs
U133_X3P:HS.132853.0.A1_3P_AT enthoprotin hs
HG-U133_PLUS_2:230609_AT enthoprotin hs
HG-U133B:230609_AT enthoprotin hs
HG-U95AV2:40128_AT enthoprotin hs
HG-U95E:74838_S_AT enthoprotin hs
HG-U95E:74841_R_AT enthoprotin hs
HG-U95D:84736_AT enthoprotin hs
HG-U133_PLUS_2:244220_AT Enthoprotin hs
HG-U133B:244220_AT Enthoprotin hs
HG-U95B:50530_AT Enthoprotin hs
HG-U95C:57835_AT Enthoprotin hs
HG-U95E:79346_AT Enthoprotin hs
HU35KSUBD:RC_AA459347_AT Enthoprotin hs
U133_X3P:HS.192088.0.A1_3P_AT Enthoprotin hs
MG-U74BV2:106294_AT expressed sequence AI642036 mm
MG-U74BV2:114626_AT expressed sequence AI642036 mm
MOE430A:1452152_AT expressed sequence AI642036 mm
MOUSE430A_2:1452152_AT expressed sequence AI642036 mm
MOUSE430_2:1452152_AT expressed sequence AI642036 mm
MU19KSUBB:TC27905_AT expressed sequence AI642036 mm
MU19KSUBB:TC34160_AT Expressed sequence AI642036, mRNA (cDNA clone IMAGE:3592699) mm
MU19KSUBC:TC38069_AT Expressed sequence AI642036, mRNA (cDNA clone IMAGE:3592699) mm
YEAST_2:1775919_AT Protein containing an N-terminal epsin-like domain involved in clathrin recruitment and traffic between the Golgi and endosomes; associates with the clathrin adaptor Gga2p Sc
Protein Similarities
Method ID Description E-Value
blast CAA91751 Hypothetical protein C34E11.1 [Caenorhabditis elegans] ref|NP_509973.1| RNAi Spreading Defective (see also sid) family member (rsd-3) [Caenorhabditis elegans] 0.0
blast CAE57338 Hypothetical protein CBG00274 [Caenorhabditis briggsae] 1.0E-144
Protein Domains
Database ID Description E-Value
Pfam IPR001026 EMBL-EBI Epsin N-terminal homology 9.5E-52
Sequence
Target Sequence 
>C. ELEGANS:192123_AT
aagagcttcttcgatgatccaatcccggcaattccaccaccatcaggagcaccatcaaac
tatgttgccccgccactatcaccagtctccaaaaatgcaccaagaaacatggatcttctt
tttgatgtgtctgctccaacaccagctgctccccagaacaatggggcaccaatcgacctg
tttggaaagctagatgctcccgtagtcaatgcagcccctgcagttgcgccatcaaatgga
ggacttgatttgtttgcttttggagcagctccgatggctcaatctattccaatggcaact
ccagtagccgcgccaataaacactgcctcaaatggatcattcaatggatttgattttgga
tcttctttcggatcaactaacaattctacaccatcatatggtggcgctgcacctttacag
ccgatgtctggattgtcacagccgcaggctcagccagctcagtcaaatctaggaggccca
tccccaaaaattggaaactcgtttgccggactcgaccagttcatgtctttgtcgttggga
tccacaaactcgaatgcaccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGAGCTTCTTCGATGATCCAATCC 35 155 862 Antisense
GAGCACCATCAAACTATGTTGCCCC 648 389 908 Antisense
GCTAGATGCTCCCGTAGTCAATGCA 207 303 1050 Antisense
GAGCAGCTCCGATGGCTCAATCTAT 522 389 1124 Antisense
CCAATGGCAACTCCAGTAGCCGCGC 19 277 1150 Antisense
TGCACCTTTACAGCCGATGTCTGGA 259 575 1269 Antisense
CGATGTCTGGATTGTCACAGCCGCA 600 249 1283 Antisense
CTCAGCCAGCTCAGTCAAATCTAGG 549 227 1310 Antisense
ATTGGAAACTCGTTTGCCGGACTCG 450 3 1351 Antisense
GACTCGACCAGTTCATGTCTTTGTC 40 375 1370 Antisense
GGATCCACAAACTCGAATGCACCAA 624 509 1399 Antisense
Sequence Source Affymetrix Proprietary Database