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[192122_s_at] Sugar (and other) transporters

Description Y51A2D.5 /REP_DB=WormBase Gene ID /WP=CE19202 /TR=Q9XXQ9 /GB=CAA16405.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Sugar (and other) transporters
Cluster 6grp_highest_10_10 > 58      6grp_high1_10_10 > 84      4grp_high_8_8 > 30      6grp_highest_nonorm > 73      6grp_total > 75      4grp_total > 24      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 342
1 2 3 4 range
A 76.3
(-3)
P 		246.9
(1.1)
P 		262.8
(1.5)
P 		323.2
(3)
P 		247
B 94
(-3)
M 		222.9
(-0.4)
P 		256.7
(0.3)
P 		393.2
(3)
P 		299
C 51.7
(-3)
A 		203.2
(0.4)
P 		276
(2)
P 		321
(3)
P 		269
avr 74
(-3) 		224.3
(0.3) 		265.2
(1.2) 		345.8
(3) 		272

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 394
1 2 3 4 5 6 range
A 522.8
(-1.1)
P 		428.3
(-3)
P 		475.7
(-2)
P 		597.6
(0.5)
P 		614.1
(0.8)
P 		722.2
(3)
P 		294
B 434.5
(-3)
P 		538.5
(-0.7)
P 		707
(3)
P 		646.3
(1.7)
P 		627.8
(1.3)
P 		686.7
(2.6)
P 		273
C 328.4
(-3)
P 		515.7
(0.2)
P 		556.7
(0.9)
P 		609
(1.7)
P 		504.1
(-0)
P 		682.9
(3)
P 		355
avr 428.6
(-3) 		494.2
(-1.5) 		579.8
(0.4) 		617.6
(1.2) 		582
(0.4) 		697.3
(3) 		269
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 27.8
(-3)
P 		53.6
(0.8)
P 		68.7
(3)
P 		47.3
(-0.1)
P 		41
B 30
(-3)
M 		55
(-0.2)
P 		59.5
(0.3)
P 		83.8
(3)
P 		54
C 17.1
(-3)
A 		58.4
(0.1)
P 		96.2
(3)
P 		54.1
(-0.2)
P 		79
avr 25
(-3) 		55.7
(0.7) 		74.8
(3) 		61.7
(1.4) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 160
1 2 3 4 5 6 range
A 96.4
(-3)
P 		152.3
(0.8)
P 		103.6
(-2.5)
P 		151.6
(0.7)
P 		185.3
(3)
P 		175.8
(2.4)
P 		89
B 151.2
(-3)
P 		179.2
(-1.4)
P 		171.7
(-1.8)
P 		171.2
(-1.9)
P 		255.1
(2.9)
P 		256.1
(3)
P 		105
C 121.7
(-3)
P 		157.4
(-1)
P 		141.7
(-1.9)
P 		122.5
(-3)
P 		163.1
(-0.7)
P 		228.6
(3)
P 		107
avr 123.1
(-3) 		163
(-0.5) 		139
(-2) 		148.4
(-1.4) 		201.2
(1.8) 		220.2
(3) 		97
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192122_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14610
Sequence Type Exemplar sequence
Representative Public ID Y51A2D.5 NCBI
Target Description Y51A2D.5 /REP_DB=WormBase Gene ID /WP=CE19202 /TR=Q9XXQ9 /GB=CAA16405.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Sugar (and other) transporters
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075223(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075223 NCBI Caenorhabditis elegans Y51A2D.5 (Y51A2D.5) mRNA, complete cds. 11/11 None
SNAP00000034248 ENSEMBL cdna:SNAP chromosome:CEL140:V:18529279:18533847:1 11/11 None
GENEFINDER00000034267 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18527468:18531672:1 11/11 None
Y51A2D.5 ENSEMBL cdna:known chromosome:CEL140:V:18527335:18531704:1 gene:Y51A2D.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18527467-18531454(+) 100.0 100.0
Public Domain and Genome References
Gene Title Sugar (and other) transporters
Ensembl Y51A2D.5
Entrez Gene 180206 Entrez gene
SwissProt Q9XXQ9 EMBL-EBI
WormBase CE19202 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:16238_AT sugar transporter family protein at
ATH1-121501:245499_AT sugar transporter family protein at
MG-U74BV2:104932_AT RIKEN cDNA A630029G22 gene mm
MG-U74CV2:167052_I_AT RIKEN cDNA A630029G22 gene mm
MOE430B:1435387_AT RIKEN cDNA A630029G22 gene mm
MOUSE430_2:1435387_AT RIKEN cDNA A630029G22 gene mm
MG-U74CV2:137992_AT Solute carrier family 2 (facilitated glucose transporter), member 13 (Slc2a13 gene) mm
MOE430B:1457868_AT Solute carrier family 2 (facilitated glucose transporter), member 13 (Slc2a13 gene) mm
MOUSE430_2:1457868_AT Solute carrier family 2 (facilitated glucose transporter), member 13 (Slc2a13 gene) mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
8643 carbohydrate transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
5351 sugar porter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA16405 Hypothetical protein Y51A2D.5 [Caenorhabditis elegans] ref|NP_507624.1| Y51A2D.5 [Caenorhabditis elegans] 0.0
blast CAE67430 Hypothetical protein CBG12920 [Caenorhabditis briggsae] 0.0
blast CAA16400 Hypothetical protein Y51A2D.4 [Caenorhabditis elegans] ref|NP_507623.1| Y51A2D.4 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005828 EMBL-EBI General substrate transporter 7.6E-88
Pfam IPR005828 EMBL-EBI General substrate transporter 5.2E-25
Pfam IPR005828 EMBL-EBI General substrate transporter 6.6E-20
Pfam IPR005828 EMBL-EBI General substrate transporter 5.2E-25
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507624.1 11 21-43,63-85,98-118,122-144,156-178,188-210,316-338,348-370,473-495,510-532,539-561
Y51A2D.5 11 21-43,63-85,98-118,122-144,156-178,188-210,316-338,348-370,473-495,510-532,539-561
SNAP00000034248 5 65-87,97-119,222-244,259-281,288-310
GENEFINDER00000034267 12 21-43,63-85,98-118,122-144,156-178,188-210,316-338,348-370,473-495,510-532,539-561,610-632
Sequence
Target Sequence 
>C. ELEGANS:192122_S_AT
gtaacttcggagcactgcggtttctgtgaagattcggagactagaactggcttctgcctg
cctgtagatcacaatgacgtcactttatactcgtctactggcttgtgcacgaatggattg
gacaagagcaactcatcattccctaatgcaacctcgtatgtctggcaaaaacatcactgc
accacatcgtacacaatccttccaattgtcatgatgggtgtctacctgctcactttttcc
tgtggcttcacctccctgccatgggtcctcaactcggagttctatccgatgtgggcccga
tcgacgtgtgtatcgattagtactttgtctaattgggttttcaacctaatcattgcactg
acatatctttcactcacacacgctataacaaaatatggtgcattttggctttacgccata
tttaccattattgcattcattttcatctacttcttggttcccgagactactggatattct
attgacgaggttgaaatgctgttcatgaacaaacgccaacgcaacatcgccatgcaagct
cgtcaagcaaaactggacgcagcatccgaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAACTTCGGAGCACTGCGGTTTCT 64 461 1234 Antisense
TCTGCCTGCCTGTAGATCACAATGA 220 609 1286 Antisense
ACTTTATACTCGTCTACTGGCTTGT 196 101 1315 Antisense
AAGAGCAACTCATCATTCCCTAATG 155 155 1357 Antisense
TGTCATGATGGGTGTCTACCTGCTC 683 557 1440 Antisense
GGGTCCTCAACTCGGAGTTCTATCC 118 497 1496 Antisense
GCACTGACATATCTTTCACTCACAC 145 317 1588 Antisense
GGCTTTACGCCATATTTACCATTAT 106 539 1640 Antisense
ATTGCATTCATTTTCATCTACTTCT 139 7 1663 Antisense
CTTCTTGGTTCCCGAGACTACTGGA 307 221 1683 Antisense
GCAAAACTGGACGCAGCATCCGACA 29 319 1780 Antisense
Sequence Source Affymetrix Proprietary Database