[Home] | [Total List]

[192119_s_at]

Description F52E4.1 /REP_DB=WormBase Gene ID /WP=CE07269 /TR=Q20676 /GB=AAB54030.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=propionyl-CoA carboxylase beta
Cluster 6grp_highest_10_10 > 04      6grp_high1_10_10 > 50      4grp_highest_8_8 > 40      4grp_high_8_8 > 43      6grp_highest_nonorm > 06      6grp_total > 41      4grp_total > 53      6grp_high1_sub > 03_04      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8967
1 2 3 4 range
A 11333.2
(3)
P 		8875.7
(1.2)
P 		7666.4
(0.3)
P 		3042.1
(-3)
P 		8291
B 10302.2
(3)
P 		9324.1
(2.2)
P 		7101.9
(0.4)
P 		3028.6
(-3)
P 		7274
C 9197.1
(3)
P 		8839.3
(2.7)
P 		7273.1
(1.3)
P 		2366
(-3)
P 		6831
avr 10277.5
(3) 		9013
(2) 		7347.1
(0.6) 		2812.2
(-3) 		7465

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8349
1 2 3 4 5 6 range
A 10087.8
(3)
P 		9728.6
(2.4)
P 		9892.3
(2.7)
P 		10119.1
(3)
P 		8125
(0)
P 		6122.3
(-3)
P 		3997
B 8339.6
(0.6)
P 		9396.2
(1.8)
P 		10502
(3)
P 		9578.1
(2)
P 		7209.7
(-0.6)
P 		5053.5
(-3)
P 		5449
C 8436.4
(-0.7)
P 		9368.9
(-0)
P 		13402.8
(3)
P 		9792.1
(0.3)
P 		8487.7
(-0.7)
P 		5427.1
(-3)
P 		7976
avr 8954.6
(0.6) 		9497.9
(1.1) 		11265.7
(3) 		9829.8
(1.5) 		7940.8
(-0.5) 		5534.3
(-3) 		5731
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3728
1 2 3 4 range
A 4126.4
(3)
P 		1926.7
(-0.6)
P 		2004.1
(-0.5)
P 		445.3
(-3)
P 		3681
B 3285.3
(3)
P 		2302.8
(0.8)
P 		1645.7
(-0.7)
P 		645.4
(-3)
P 		2640
C 3044.5
(3)
P 		2541.3
(1.9)
P 		2534.9
(1.8)
P 		398.9
(-3)
P 		2646
avr 3485.4
(3) 		2256.9
(0.5) 		2061.6
(0.1) 		496.5
(-3) 		2989

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1969
1 2 3 4 5 6 range
A 1859.6
(-1.9)
P 		3460
(3)
P 		2154.3
(-1)
P 		2566.4
(0.3)
P 		2451.8
(-0.1)
P 		1490.6
(-3)
P 		1969
B 2901.8
(1.9)
P 		3127.6
(3)
P 		2550.2
(0.2)
P 		2536.9
(0.1)
P 		2929.2
(2)
P 		1884.4
(-3)
P 		1243
C 3127
(1.9)
P 		2858.7
(0.9)
P 		3411.2
(3)
P 		1969.2
(-2.4)
P 		2746.5
(0.5)
P 		1816.8
(-3)
P 		1594
avr 2629.5
(0.8) 		3148.8
(3) 		2705.2
(1.1) 		2357.5
(-0.3) 		2709.2
(1.1) 		1730.6
(-3) 		1418
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192119_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18367
Sequence Type Exemplar sequence
Representative Public ID F52E4.1 NCBI
Target Description F52E4.1 /REP_DB=WormBase Gene ID /WP=CE07269 /TR=Q20676 /GB=AAB54030.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=propionyl-CoA carboxylase beta
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171647(11), NM_171648(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171647 NCBI Caenorhabditis elegans F52E4.1b (F52E4.1) mRNA, complete cds. 11/11 None
NM_171648 NCBI Caenorhabditis elegans F52E4.1a (F52E4.1) mRNA, complete cds. 11/11 None
SNAP00000026385 ENSEMBL cdna:SNAP chromosome:CEL140:X:3090428:3092202:1 11/11 None
GENEFINDER00000026392 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3090428:3092202:1 11/11 None
F52E4.1b ENSEMBL cdna:known chromosome:CEL140:X:3089487:3092448:1 gene:F52E4.1 11/11 None
F52E4.1a.1 ENSEMBL cdna:known chromosome:CEL140:X:3090259:3092202:1 gene:F52E4.1 11/11 None
F52E4.1a.3 ENSEMBL cdna:known chromosome:CEL140:X:3090412:3092202:1 gene:F52E4.1 11/11 None
F52E4.1a.2 ENSEMBL cdna:known chromosome:CEL140:X:3090418:3092202:1 gene:F52E4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3090427-3092202(+) 100.0 100.0
Public Domain and Genome References
Ensembl F52E4.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL65786 Hypothetical protein F52E4.1b [Caenorhabditis elegans] ref|NP_741742.1| F52E4.1b [Caenorhabditis elegans] 0.0
blast AAB54030 Hypothetical protein F52E4.1a [Caenorhabditis elegans] ref|NP_741743.1| F52E4.1a [Caenorhabditis elegans] 0.0
blast CAE68374 Hypothetical protein CBG14130 [Caenorhabditis briggsae] 0.0
Protein Families
Method ID Description E-Value
ec ACCD_ECOLI (P08193) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta (EC 6.4.1.2) (ACCase beta chain) 1.0E-79
ec ACCA_ECOLI (P30867) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha (EC 6.4.1.2) 4.0E-6
Protein Domains
Database ID Description E-Value
Pfam IPR000022 EMBL-EBI Carboxyl transferase 1.0E-126
Pfam IPR000022 EMBL-EBI Carboxyl transferase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:192119_S_AT
gatgccttgatatcaactcttccgtgaaaggagctcgtttcgtccgattctgcgatgctt
tcaacatcccaatcatcactttggttgacgttcccggtttcttgccaggaactgcccaag
agtacggaggtatcatccgtcacggagccaaacttctctacgcttttgccgaggccaccg
ttccaaagattaccatcattactcgcaaagccttcggaggagcttacgatgtcatgtcat
caaagcatcttcgtggagacatcaactacgcctggccaactgctgaggttgctgtgatgg
gagccaagggtgcagtctccattcttttccgtaatgataaggagcacgccgttcaacacg
aggaggaatacactgagctgttcagcaacccgttcccagccgctgtcagaggattcgtcg
acgacattatcattccatcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGCCTTGATATCAACTCTTCCGT 576 413 1091 Antisense
TGAAAGGAGCTCGTTTCGTCCGATT 236 573 1115 Antisense
GATTCTGCGATGCTTTCAACATCCC 45 433 1136 Antisense
CGTCACGGAGCCAAACTTCTCTACG 272 247 1228 Antisense
AGGCCACCGTTCCAAAGATTACCAT 444 1 1262 Antisense
GATTACCATCATTACTCGCAAAGCC 619 429 1278 Antisense
GGAGCCAAGGGTGCAGTCTCCATTC 429 521 1390 Antisense
GATAAGGAGCACGCCGTTCAACACG 311 423 1426 Antisense
CACTGAGCTGTTCAGCAACCCGTTC 275 197 1461 Antisense
GTTCCCAGCCGCTGTCAGAGGATTC 410 441 1482 Antisense
GTCGACGACATTATCATTCCATCAG 663 473 1507 Antisense
Sequence Source Affymetrix Proprietary Database