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[192118_s_at]

Description F10C1.7B /REP_DB=WormBase Gene ID /WP=CE02623 /TR=Q19287 /GB=AAA93404.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=Intermediate filament protein
Cluster 6grp_highest_10_10 > 52      6grp_high1_10_10 > 03      4grp_highest_8_8 > 52      4grp_high_8_8 > 24      6grp_highest_nonorm > 05      6grp_total > 35      4grp_total > 39      6grp_highest_sub > 01_02      6grp_cgc > 34      6grp_high1_sub > De      6grp_cgc_sub > Cu      6grp_total_sub > Cup      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4000
1 2 3 4 range
A 11766
(3)
P 		8782.1
(-2)
P 		8176
(-3)
P 		10156.9
(0.3)
P 		3590
B 12176.1
(3)
P 		8670.1
(-3)
P 		9310.4
(-1.9)
P 		9343.1
(-1.8)
P 		3506
C 11307.5
(3)
P 		8621.3
(-3)
P 		8610.9
(-3)
P 		9027.1
(-2.1)
P 		2697
avr 11749.9
(3) 		8691.2
(-3) 		8699.1
(-3) 		9509
(-1.4) 		3059

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4635
1 2 3 4 5 6 range
A 8615.1
(2.2)
P 		9224.3
(3)
P 		6246.9
(-1)
P 		4785.3
(-2.9)
P 		4703.6
(-3)
P 		5693.9
(-1.7)
P 		4521
B 8357
(2.9)
P 		8403.1
(3)
P 		7798.1
(2)
P 		4666.8
(-2.9)
P 		4589.8
(-3)
P 		5170.3
(-2.1)
P 		3813
C 8464.6
(3)
P 		7753.8
(1.9)
P 		7196.3
(1)
P 		4732.8
(-3)
P 		5229.4
(-2.2)
P 		5569.6
(-1.7)
P 		3732
avr 8478.9
(3) 		8460.4
(3) 		7080.4
(0.8) 		4728.3
(-3) 		4840.9
(-2.8) 		5477.9
(-1.8) 		3751
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2797
1 2 3 4 range
A 4284
(3)
P 		1906.4
(-2.1)
P 		2137.4
(-1.6)
P 		1486.8
(-3)
P 		2797
B 3882.9
(3)
P 		2141.3
(-2.5)
P 		2157.4
(-2.5)
P 		1991
(-3)
P 		1892
C 3743.1
(3)
P 		2478.7
(-0.4)
P 		3001.2
(1)
P 		1522.1
(-3)
P 		2221
avr 3970
(3) 		2175.5
(-1.7) 		2432
(-1) 		1666.6
(-3) 		2303

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2329
1 2 3 4 5 6 range
A 1588.1
(-1.9)
P 		3280.6
(3)
P 		1360.4
(-2.6)
P 		1213.7
(-3)
P 		1419.3
(-2.4)
P 		1386.3
(-2.5)
P 		2067
B 2907.8
(3)
P 		2797.1
(2.6)
P 		1893.6
(-0.6)
P 		1236.1
(-3)
P 		1864.8
(-0.7)
P 		1928
(-0.5)
P 		1672
C 3137.4
(3)
P 		2365.9
(0.9)
P 		1831.6
(-0.6)
P 		951.8
(-3)
P 		1692.2
(-1)
P 		1864.5
(-0.5)
P 		2186
avr 2544.4
(2) 		2814.5
(3) 		1695.2
(-1) 		1133.9
(-3) 		1658.8
(-1.1) 		1726.3
(-0.9) 		1681
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192118_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5286
Sequence Type Exemplar sequence
Representative Public ID F10C1.7B NCBI
Target Description F10C1.7B /REP_DB=WormBase Gene ID /WP=CE02623 /TR=Q19287 /GB=AAA93404.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=Intermediate filament protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062733(9), NM_062732(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062733 NCBI Caenorhabditis elegans Intermediate Filament, B family member (ifb-2) (ifb-2) mRNA, complete cds. 9/11 None
NM_062732 NCBI Caenorhabditis elegans Intermediate Filament, B family member (ifb-2) (ifb-2) mRNA, complete cds. 11/11 None
SNAP00000018694 ENSEMBL cdna:SNAP chromosome:CEL140:II:5750872:5753943:1 11/11 None
GENEFINDER00000018709 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5750165:5753943:1 11/11 None
F10C1.7c.3 ENSEMBL cdna:known chromosome:CEL140:II:5750150:5754105:1 gene:F10C1.7 9/11 None
F10C1.7c.2 ENSEMBL cdna:known chromosome:CEL140:II:5750153:5754105:1 gene:F10C1.7 9/11 None
F10C1.7c.1 ENSEMBL cdna:known chromosome:CEL140:II:5750155:5754105:1 gene:F10C1.7 9/11 None
F10C1.7c.4 ENSEMBL cdna:known chromosome:CEL140:II:5750155:5754290:1 gene:F10C1.7 9/11 None
F10C1.7a ENSEMBL cdna:known chromosome:CEL140:II:5750165:5754102:1 gene:F10C1.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_062731 6/11 Cross Hyb Matching Probes None
SNAP00000018696 6/11 Cross Hyb Matching Probes None
GENEFINDER00000018706 6/11 Cross Hyb Matching Probes None
F10C1.8a.2 6/11 Cross Hyb Matching Probes None
F10C1.8a.1 6/11 Cross Hyb Matching Probes None
F10C1.8b 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5750161-5756510(+) 100.0 100.0
Public Domain and Genome References
Ensembl F10C1.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_495134 Intermediate Filament, B family member (ifb-2) [Caenorhabditis elegans] gb|AAK68314.1| Intermediate filament, b protein 2, isoform c [Caenorhabditis elegans] 0.0
blast NP_495133 Intermediate Filament, B family member (ifb-2) [Caenorhabditis elegans] gb|AAA93405.1| Intermediate filament, b protein 2, isoform a [Caenorhabditis elegans] sp|Q19286|IFB2_CAEEL Intermediate filament protein ifb-2 (Intermediate filament protein B2) (IF-B2) (Cel IF B2) 0.0
blast CAA55296 cytoplasmic intermediate filament protein [Caenorhabditis elegans] 0.0
blast T16016 hypothetical protein F10C1.7b - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001664 EMBL-EBI Intermediate filament protein 3.1E-11
Pfam IPR001664 EMBL-EBI Intermediate filament protein 4.1E-41
Pfam IPR001322 EMBL-EBI Intermediate filament, C-terminal 1.4E-63
Pfam IPR001664 EMBL-EBI Intermediate filament protein 3.4E-10
Pfam IPR001664 EMBL-EBI Intermediate filament protein 4.1E-41
Pfam IPR001322 EMBL-EBI Intermediate filament, C-terminal 1.4E-63
Pfam IPR001664 EMBL-EBI Intermediate filament protein 3.1E-11
Pfam IPR001664 EMBL-EBI Intermediate filament protein 4.1E-41
Pfam IPR001322 EMBL-EBI Intermediate filament, C-terminal 1.4E-63
Pfam IPR001322 EMBL-EBI Intermediate filament, C-terminal 1.4E-63
Sequence
Target Sequence 
>C. ELEGANS:192118_S_AT
atgccctccgatttatgcgtgaagactgccagactttgattgctgaacttcaagctcttc
ttaacaccaaacaaactttggatactgagattgccatctacagaaagcttgtcgagtccg
aggaaggaagattcactcatgttggacagggggtcgttgtcgcccagcaggagactacaa
gattggtaccagtcgagcaagatcactgggactctggagaggttcaaactcgttcctcat
tcaagagacacgctaagggaaatgtgagcatcgttgagtgcgatccacaaggaaagtaca
tcattcttgaaaacaccagtggatcagttgccgaagatgtaagcaactttgaaatccgtc
gtgttattgatggagttcaagccttcgttttccgtctcccatctcacttagttattcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCCCTCCGATTTATGCGTGAAGA 258 41 1043 Antisense
GAAGACTGCCAGACTTTGATTGCTG 675 339 1063 Antisense
CAAGCTCTTCTTAACACCAAACAAA 363 185 1093 Antisense
TGTTGGACAGGGGGTCGTTGTCGCC 293 555 1182 Antisense
TTGTCGCCCAGCAGGAGACTACAAG 533 685 1199 Antisense
GCAAGATCACTGGGACTCTGGAGAG 400 321 1239 Antisense
GAGGTTCAAACTCGTTCCTCATTCA 347 401 1261 Antisense
GTGAGCATCGTTGAGTGCGATCCAC 495 481 1306 Antisense
AACACCAGTGGATCAGTTGCCGAAG 513 135 1354 Antisense
GATGGAGTTCAAGCCTTCGTTTTCC 147 407 1411 Antisense
TCTCCCATCTCACTTAGTTATTCAA 491 611 1437 Antisense
Sequence Source Affymetrix Proprietary Database