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[192117_at] synaptotagamin carboxyl terminus

Description DH11.4 /REP_DB=WormBase Gene ID /WP=CE02173 /TR=Q19016 /GB=CAA88941.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=synaptotagamin carboxyl terminus
Cluster 6grp_highest_10_10 > 42      6grp_high1_10_10 > 13      4grp_highest_8_8 > 52      4grp_high_8_8 > 16      6grp_highest_nonorm > 41      6grp_total > 13      4grp_total > 39      6grp_highest_sub > 02      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 892
1 2 3 4 range
A 1010.5
(3)
P 		324
(-2.2)
P 		222
(-3)
P 		539.5
(-0.6)
P 		789
B 1114.3
(3)
P 		291.2
(-2.7)
P 		244.5
(-3)
P 		550.4
(-0.9)
P 		870
C 1072.3
(3)
P 		312.5
(-2.5)
P 		246.4
(-3)
P 		641.2
(-0.1)
P 		826
avr 1065.7
(3) 		309.2
(-2.5) 		237.6
(-3) 		577
(-0.5) 		828

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 621
1 2 3 4 5 6 range
A 849.7
(1.8)
P 		969.8
(3)
P 		606.4
(-0.7)
P 		635.5
(-0.4)
P 		474.4
(-2.1)
P 		381.9
(-3)
P 		588
B 725.9
(1.1)
P 		901.4
(3)
P 		655.6
(0.3)
P 		511.7
(-1.3)
P 		487.4
(-1.6)
P 		358.7
(-3)
P 		543
C 948.1
(3)
P 		877.5
(2.3)
P 		714.7
(0.7)
P 		639.6
(-0.1)
P 		549.5
(-1)
P 		349.2
(-3)
P 		599
avr 841.2
(2.2) 		916.2
(3) 		658.9
(0.2) 		595.6
(-0.5) 		503.8
(-1.5) 		363.3
(-3) 		553
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 311
1 2 3 4 range
A 367.9
(3)
P 		70.3
(-2.8)
P 		58
(-3)
P 		79
(-2.6)
P 		310
B 355.3
(3)
P 		71.9
(-2.7)
P 		56.7
(-3)
P 		117.3
(-1.8)
P 		299
C 355
(3)
P 		89.8
(-2.9)
P 		85.9
(-3)
P 		108.1
(-2.5)
P 		269
avr 359.4
(3) 		77.3
(-2.8) 		66.9
(-3) 		101.5
(-2.3) 		293

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 258
1 2 3 4 5 6 range
A 156.6
(-1.5)
P 		344.9
(3)
P 		132.1
(-2.1)
P 		161.2
(-1.4)
P 		143.2
(-1.8)
P 		93
(-3)
P 		252
B 252.6
(1.3)
P 		300
(3)
P 		159.2
(-2.1)
P 		135.5
(-2.9)
P 		198
(-0.7)
P 		133.8
(-3)
P 		166
C 351.4
(3)
P 		267.8
(0.9)
P 		181.9
(-1.3)
P 		128.6
(-2.7)
P 		177.8
(-1.4)
P 		116.9
(-3)
P 		235
avr 253.5
(1.4) 		304.2
(3) 		157.7
(-1.6) 		141.8
(-2.1) 		173
(-1.2) 		114.6
(-3) 		190
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192117_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3355
Sequence Type Exemplar sequence
Representative Public ID DH11.4 NCBI
Target Description DH11.4 /REP_DB=WormBase Gene ID /WP=CE02173 /TR=Q19016 /GB=CAA88941.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=synaptotagamin carboxyl terminus
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063272(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063272 NCBI Caenorhabditis elegans DH11.4 (DH11.4) mRNA, complete cds. 11/11 None
SNAP00000004559 ENSEMBL cdna:SNAP chromosome:CEL140:II:7992305:7993903:1 11/11 None
GENEFINDER00000004563 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7992742:7993903:1 11/11 None
DH11.4 ENSEMBL cdna:known chromosome:CEL140:II:7992305:7994120:1 gene:DH11.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7992301-7993900(+) 100.0 100.0
Public Domain and Genome References
Gene Title synaptotagamin carboxyl terminus
Ensembl DH11.4
Entrez Gene 183972 Entrez gene
SwissProt Q19016 EMBL-EBI
WormBase CE36121 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88941 Hypothetical protein DH11.4 [Caenorhabditis elegans] ref|NP_495673.2| DH11.4 [Caenorhabditis elegans] 0.0
blast CAA88941 Hypothetical protein DH11.4 [Caenorhabditis elegans] ref|NP_495673.2| DH11.4 [Caenorhabditis elegans] 1.0E-169
blast CAE59809 Hypothetical protein CBG03272 [Caenorhabditis briggsae] 1.0E-164
blast AAH76166 Zgc:92682 [Danio rerio] ref|NP_001002413.1| hypothetical protein LOC436686 [Danio rerio] 1.0E-9
Protein Domains
Database ID Description E-Value
Pfam IPR000008 EMBL-EBI C2 domain 1.4E-4
Pfam IPR000008 EMBL-EBI C2 domain 1.4E-4
Pfam IPR000008 EMBL-EBI C2 domain 1.4E-4
Sequence
Target Sequence 
>C. ELEGANS:192117_AT
tgtgccgaacatcaccagaggccatgaatttgaatgctctttatgcagcagcaaataagg
ccgttagctgtggaggagatgtttgtgaacttctaacaattctcacttatgctccaacag
ttcaatttgtgacaacaactgtcaaaaaagcaaaagctcttccgtataataatgctccat
ttgccagaataatgttattcgagggaaggagactaatggaacaaaaacaaacaactgtca
atccatctttagttcataaatcttctgttgatggttcaaaaccttcatcatcatcagcgt
caacatcttcaaatgacaatccatcggatgtttccttctcagaatcatttttatttcatg
tacccccaacaaagctggacaggtctcacattgtgatagagctctacgatcatgacgatg
aaggaggtcttcaaaagataggtcattgtgtaattggtcgattagtagatggaacaggga
atgcccattggattcagatggttcgacaacacggattgcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTGCCGAACATCACCAGAGGCCAT 413 557 749 Antisense
AATAAGGCCGTTAGCTGTGGAGGAG 496 169 802 Antisense
ACAATTCTCACTTATGCTCCAACAG 507 115 844 Antisense
GCTCTTCCGTATAATAATGCTCCAT 360 301 904 Antisense
CAAACAACTGTCAATCCATCTTTAG 15 191 976 Antisense
ATCATCAGCGTCAACATCTTCAAAT 111 31 1038 Antisense
ATCCATCGGATGTTTCCTTCTCAGA 24 41 1067 Antisense
TATTTCATGTACCCCCAACAAAGCT 680 659 1100 Antisense
AGCTGGACAGGTCTCACATTGTGAT 641 81 1121 Antisense
GATAGAGCTCTACGATCATGACGAT 301 425 1143 Antisense
GATGGTTCGACAACACGGATTGCCT 537 407 1245 Antisense
Sequence Source Affymetrix Proprietary Database