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[192116_s_at] Cysteine proteases (2 domains)

Description Y51A2D.8 /REP_DB=WormBase Gene ID /WP=CE19204 /TR=Q9XXQ7 /GB=CAA16407.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Cysteine proteases (2 domains)
Cluster 6grp_total > 10      4grp_total > 26      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 110
1 2 3 4 range
A 17.8
(-3)
A 		51.1
(-0.7)
A 		37.8
(-1.6)
A 		102.9
(3)
M 		85
B 20.8
(-1.9)
A 		75.2
(3)
A 		9.1
(-3)
A 		57.4
(1.4)
A 		66
C 23.3
(-2.8)
A 		78.4
(0.5)
A 		19.7
(-3)
A 		119.1
(3)
A 		99
avr 20.6
(-3) 		68.2
(0.9) 		22.2
(-2.9) 		93.1
(3) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 16
(-2.1)
A 		28.7
(-0.4)
A 		13.4
(-2.4)
A 		39.5
(0.9)
A 		8.6
(-3)
A 		55.6
(3)
A 		47
B 12.7
(-1.6)
A 		19.5
(-0.1)
A 		26.7
(1.5)
A 		19.5
(-0.1)
A 		33.7
(3)
M 		6.3
(-3)
A 		27
C 29.3
(0.2)
A 		49.7
(2.9)
A 		50.5
(3)
A 		26.8
(-0.1)
A 		40.2
(1.7)
A 		4.5
(-3)
A 		46
avr 19.3
(-3) 		32.6
(3) 		30.2
(1.9) 		28.6
(1.2) 		27.5
(0.7) 		22.1
(-1.7) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 6.5
(-3)
A 		11.1
(0.2)
A 		9.9
(-0.6)
A 		15.1
(3)
M 		9
B 6.6
(-1.4)
A 		18.6
(3)
A 		2.1
(-3)
A 		12.2
(0.7)
A 		17
C 7.7
(-2.7)
A 		22.5
(3)
A 		6.9
(-3)
A 		20.1
(2.1)
A 		16
avr 6.9
(-2.7) 		17.4
(3) 		6.3
(-3) 		15.8
(2.1) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 2.9
(-2.8)
A 		10.2
(1.2)
A 		2.9
(-2.8)
A 		10
(1.1)
A 		2.6
(-3)
A 		13.5
(3)
A 		11
B 4.4
(-1.9)
A 		6.5
(-0.8)
A 		6.5
(-0.8)
A 		5.2
(-1.5)
A 		13.7
(3)
M 		2.4
(-3)
A 		11
C 10.9
(1.1)
A 		15.2
(3)
A 		12.8
(1.9)
A 		5.4
(-1.3)
A 		13
(2)
A 		1.5
(-3)
A 		14
avr 6.1
(-2.6) 		10.6
(3) 		7.4
(-1) 		6.9
(-1.6) 		9.8
(2) 		5.8
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192116_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12566
Sequence Type Exemplar sequence
Representative Public ID Y51A2D.8 NCBI
Target Description Y51A2D.8 /REP_DB=WormBase Gene ID /WP=CE19204 /TR=Q9XXQ7 /GB=CAA16407.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Cysteine proteases (2 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075226(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075226 NCBI Caenorhabditis elegans Y51A2D.8 (Y51A2D.8) mRNA, complete cds. 11/11 A 
GENEFINDER00000034274 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18552627:18556421:-1 11/11 None
Y51A2D.8 ENSEMBL cdna:known chromosome:CEL140:V:18552605:18556421:-1 gene:Y51A2D.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18552626-18556421(-) 100.0 100.0
Public Domain and Genome References
Gene Title Cysteine proteases (2 domains)
Ensembl Y51A2D.8
Entrez Gene 180208 Entrez gene
SwissProt Q9XXQ7 EMBL-EBI
WormBase CE19204 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8234 cysteine-type peptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA16407 Hypothetical protein Y51A2D.8 [Caenorhabditis elegans] ref|NP_507627.1| Y51A2D.8 [Caenorhabditis elegans] 0.0
blast CAE67436 Hypothetical protein CBG12926 [Caenorhabditis briggsae] 1.0E-152
blast CAE67436 Hypothetical protein CBG12926 [Caenorhabditis briggsae] 1.0E-148
blast CAA94738 Hypothetical protein C50F4.3 [Caenorhabditis elegans] ref|NP_505458.1| Temporarily Assigned Gene name family member (tag-329) [Caenorhabditis elegans] 5.0E-92
blast CAA94738 Hypothetical protein C50F4.3 [Caenorhabditis elegans] ref|NP_505458.1| Temporarily Assigned Gene name family member (tag-329) [Caenorhabditis elegans] 2.0E-89
Protein Domains
Database ID Description E-Value
Pfam IPR000668 EMBL-EBI Peptidase C1A, papain 1.4E-53
Sequence
Target Sequence 
>C. ELEGANS:192116_S_AT
cggtcaccgcactggtggagactgtgtatgcagcacattctggaaagtttaagtccctat
ctgaccaagaggtttgtgattgcggtacggaaggaacaccgggatgtaagggaggaagct
tgaccctcggagtccagtacgtcaagaaatatgggctttctggagatgaagactatcctt
acgatcaaaatcgggctaaccagggcagaagatgtcgtttaagagaaactgacagaattg
tgccggctagagccttcaactttgccgtaatcaacccacgccgagccgaagaacaaatca
tccaggtgctcaccgagtggaaggtcccagtagctgtctatttcaaagtcggcgatcaat
tcaaagaatataaagaaggagtgatcattgaggacgattgtagaagagctactcaatggc
atgccggagcaattgtgggttacgataccgttgaggatagccgtggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGGTCACCGCACTGGTGGAGACTGT 26 243 551 Antisense
GTTTAAGTCCCTATCTGACCAAGAG 101 449 597 Antisense
GAGGTTTGTGATTGCGGTACGGAAG 314 401 619 Antisense
AGGGAGGAAGCTTGACCCTCGGAGT 435 57 659 Antisense
CCTCGGAGTCCAGTACGTCAAGAAA 105 267 675 Antisense
AGCCTTCAACTTTGCCGTAATCAAC 538 81 801 Antisense
CCCACGCCGAGCCGAAGAACAAATC 60 259 825 Antisense
GAACAAATCATCCAGGTGCTCACCG 564 351 841 Antisense
GAAGAGCTACTCAATGGCATGCCGG 328 339 953 Antisense
CATGCCGGAGCAATTGTGGGTTACG 415 209 970 Antisense
GATACCGTTGAGGATAGCCGTGGAA 294 423 994 Antisense
Sequence Source Affymetrix Proprietary Database