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[192115_at]

Description Y6B3B.5 /REP_DB=WormBase Gene ID /WP=CE20179 /TR=Q9XWE8 /GB=CAA21725.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Inositol monophosphatase family
Cluster 4grp_high_8_8 > 15      6grp_total > 79      4grp_total > 01      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 150.7
(-2.1)
A 		184.6
(1)
A 		140.3
(-3)
A 		207.3
(3)
P 		67
B 172.7
(1.2)
P 		108.3
(-3)
A 		201.2
(3)
P 		200.7
(3)
P 		93
C 145.7
(-3)
P 		157.1
(-2.2)
P 		150.4
(-2.7)
P 		231.5
(3)
A 		86
avr 156.4
(-2.4) 		150
(-3) 		164
(-1.7) 		213.2
(3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 246
1 2 3 4 5 6 range
A 195.4
(3)
P 		154.5
(0.8)
P 		175
(1.9)
M 		82
(-3)
A 		158.6
(1.1)
A 		191.5
(2.8)
A 		113
B 114.4
(-3)
P 		189.5
(2.7)
P 		151.8
(-0.2)
M 		140.3
(-1)
A 		155
(0.1)
P 		193.3
(3)
P 		79
C 140.2
(-0.6)
M 		187.4
(0.5)
P 		42.6
(-3)
A 		201.8
(0.9)
A 		155.6
(-0.2)
P 		288.2
(3)
P 		246
avr 150
(-1.4) 		177.1
(0.2) 		123.1
(-3) 		141.4
(-1.9) 		156.4
(-1) 		224.3
(3) 		101
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 54.9
(3)
A 		40.1
(-0.6)
A 		36.7
(-1.4)
A 		30.3
(-3)
P 		25
B 55.1
(3)
P 		26.7
(-3)
A 		46.6
(1.2)
P 		42.8
(0.4)
P 		28
C 48.2
(1.1)
P 		45.2
(-0.2)
P 		52.4
(3)
P 		39
(-3)
A 		13
avr 52.7
(3) 		37.3
(-3) 		45.2
(0.1) 		37.4
(-3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 36
(-0.3)
P 		55
(3)
P 		38.1
(0)
M 		20.8
(-3)
A 		47.8
(1.7)
A 		46.6
(1.5)
A 		34
B 39.8
(-2.5)
P 		63.1
(1.5)
P 		36.9
(-3)
M 		37.2
(-2.9)
A 		63
(1.4)
P 		72.1
(3)
P 		35
C 52
(-0.1)
M 		57.2
(0.2)
P 		10.8
(-3)
A 		40.6
(-0.9)
A 		50.3
(-0.2)
P 		96.5
(3)
P 		86
avr 42.6
(-1.1) 		58.4
(1.1) 		28.6
(-3) 		32.9
(-2.4) 		53.7
(0.5) 		71.7
(3) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192115_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1832
Sequence Type Exemplar sequence
Representative Public ID Y6B3B.5 NCBI
Target Description Y6B3B.5 /REP_DB=WormBase Gene ID /WP=CE20179 /TR=Q9XWE8 /GB=CAA21725.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Inositol monophosphatase family
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026630, NM_001026631
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000043755 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13758053:13764251:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001026631 8/11 Cross Hyb Matching Probes None
NM_001026630 8/11 Cross Hyb Matching Probes None
SNAP00000043753 6/11 Cross Hyb Matching Probes None
Y6B3B.5b 8/11 Cross Hyb Matching Probes None
Y6B3B.5a 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13759384-13764182(-) 97.81 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21725 Hypothetical protein Y6B3B.5a [Caenorhabditis elegans] ref|NP_001021801.1| Y6B3B.5a [Caenorhabditis elegans] 1.0E-155
blast CAH60799 Hypothetical protein Y6B3B.5b [Caenorhabditis elegans] ref|NP_001021802.1| Y6B3B.5b [Caenorhabditis elegans] 1.0E-155
blast CAE68023 Hypothetical protein CBG13639 [Caenorhabditis briggsae] 1.0E-100
Protein Domains
Database ID Description E-Value
Pfam IPR000760 EMBL-EBI Inositol monophosphatase 2.0E-14
Pfam IPR000760 EMBL-EBI Inositol monophosphatase 5.7E-10
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000043755 2 9-28,464-486
Sequence
Target Sequence 
>C. ELEGANS:192115_AT
agacgcttcgacttgttaatggaactgctgaactctaccttcacacaactgcaatcaaaa
aatgggatacctgtgcgggagacgcaattctacgaacaatgggcggagctatgttggatt
tagagggacaacctctgagattttccccccaaaaaatcaataatttcacagaaaaatggt
cagaaattaaaaattcgtttgaaaaaatcactttaaaatcaccaaaaaaaaataaattaa
attttctgaaaaacgaccaaaaaaaaattccaataaaatccaaagctggtagagatattt
caattttcaaacgccaaatgtttgcaaaactcagtttttccgctattttcagcccaaaaa
atcaatattttcctttcagatactcctctgctgacccacttctgaacaaaaaaggactcc
tcgcaaccgtccgaaatccttattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGACGCTTCGACTTGTTAATGGAAC 39 69 944 Antisense
AATGGAACTGCTGAACTCTACCTTC 680 161 961 Antisense
TCTACCTTCACACAACTGCAATCAA 28 615 977 Antisense
AATGGGATACCTGTGCGGGAGACGC 106 163 1004 Antisense
GCGGGAGACGCAATTCTACGAACAA 33 293 1018 Antisense
AATGGGCGGAGCTATGTTGGATTTA 473 163 1041 Antisense
GAGGGACAACCTCTGAGATTTTCCC 360 399 1066 Antisense
GCAAAACTCAGTTTTTCCGCTATTT 310 317 1267 Antisense
AATATTTTCCTTTCAGATACTCCTC 9 175 1307 Antisense
CTGCTGACCCACTTCTGAACAAAAA 633 237 1331 Antisense
TCGCAACCGTCCGAAATCCTTATTC 580 599 1364 Antisense
Sequence Source Affymetrix Proprietary Database