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[192113_s_at]

Description T13H2.3 /REP_DB=WormBase Gene ID /WP=CE04950 /TR=Q22463 /GB=AAB52494.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=zinc finger containing protein
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 16      4grp_highest_8_8 > 61      4grp_high_8_8 > 18      6grp_highest_nonorm > 40      6grp_total > 07      4grp_total > 30      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 352
1 2 3 4 range
A 822
(3)
P 		538.3
(-1.8)
P 		470
(-3)
P 		804.7
(2.7)
P 		352
B 670.4
(2.5)
P 		674.5
(2.6)
P 		506.3
(-3)
P 		686.1
(3)
P 		180
C 820.3
(3)
P 		613
(-1.5)
P 		543.4
(-3)
P 		567.5
(-2.5)
P 		277
avr 770.9
(3) 		608.6
(-0.7) 		506.6
(-3) 		686.1
(1.1) 		264

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 584
1 2 3 4 5 6 range
A 873.9
(3)
P 		641.6
(0.2)
P 		381
(-3)
P 		490.5
(-1.7)
P 		407.8
(-2.7)
P 		494.7
(-1.6)
P 		493
B 960.2
(3)
P 		717.7
(0.5)
P 		606.2
(-0.6)
P 		417.4
(-2.6)
P 		376.2
(-3)
P 		494.3
(-1.8)
P 		584
C 696
(3)
P 		583.5
(0.8)
P 		535.4
(-0.1)
P 		512.5
(-0.5)
P 		383.5
(-3)
P 		458.3
(-1.6)
P 		313
avr 843.4
(3) 		647.6
(0.4) 		507.5
(-1.4) 		473.5
(-1.9) 		389.2
(-3) 		482.4
(-1.8) 		454
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 204
1 2 3 4 range
A 299.3
(3)
P 		116.8
(-3)
P 		122.9
(-2.8)
P 		117.8
(-3)
P 		183
B 213.8
(3)
P 		166.6
(0.1)
P 		117.3
(-3)
P 		146.2
(-1.2)
P 		97
C 271.5
(3)
P 		176.2
(-0.3)
P 		189.4
(0.2)
P 		95.7
(-3)
P 		176
avr 261.5
(3) 		153.2
(-1.6) 		143.2
(-2) 		119.9
(-3) 		142

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 251
1 2 3 4 5 6 range
A 161.1
(0.2)
P 		228.2
(3)
P 		83
(-3)
P 		124.4
(-1.3)
P 		123.1
(-1.3)
P 		120.4
(-1.5)
P 		145
B 334.1
(3)
P 		238.9
(0.4)
P 		147.2
(-2)
P 		110.6
(-3)
P 		152.9
(-1.9)
P 		184.3
(-1)
P 		224
C 258
(3)
P 		178
(-0.1)
P 		136.3
(-1.7)
P 		103.1
(-3)
P 		124.1
(-2.2)
P 		153.4
(-1.1)
P 		155
avr 251.1
(3) 		215
(1.4) 		122.2
(-2.6) 		112.7
(-3) 		133.4
(-2.1) 		152.7
(-1.3) 		138
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192113_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16629
Sequence Type Exemplar sequence
Representative Public ID T13H2.3 NCBI
Target Description T13H2.3 /REP_DB=WormBase Gene ID /WP=CE04950 /TR=Q22463 /GB=AAB52494.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=zinc finger containing protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029733(11), NM_001029734(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029733 NCBI Caenorhabditis elegans T13H2.5a (T13H2.5) mRNA, complete cds. 11/11 None
NM_001029734 NCBI Caenorhabditis elegans T13H2.5b (T13H2.5) mRNA, complete cds. 11/11 None
SNAP00000044515 ENSEMBL cdna:SNAP chromosome:CEL140:X:4596169:4600928:-1 11/11 None
GENEFINDER00000044522 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4596169:4603269:-1 11/11 None
T13H2.3 ENSEMBL cdna:known chromosome:CEL140:X:4596047:4599959:-1 gene:T13H2.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4596169-4605868(-) 99.51 100.0
Public Domain and Genome References
Ensembl T13H2.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001024904 T13H2.5a [Caenorhabditis elegans] gb|AAM69065.2| Hypothetical protein T13H2.5a [Caenorhabditis elegans] 0.0
blast T16870 hypothetical protein T13H2.3 - Caenorhabditis elegans 0.0
blast NP_001024905 T13H2.5b [Caenorhabditis elegans] gb|AAM69064.1| Hypothetical protein T13H2.5b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 7.6E-8
Sequence
Target Sequence 
>C. ELEGANS:192113_S_AT
acagaaccttctgatgcgagtcccttccgctcagacaccggtcgccccgcgagcccctac
agtagctcctcaatcagttgttcaacaagcaccggcaccagctacaccaattgcgatctc
agttgcgactacacaagttacacggccggaaactgttgagccatttcgatcgatttcctc
tggaactggaactggaacggaaagaataaataacaacgtcgagttggagctgtggcctac
aaacggttattccgagaaaaagcgcaaagaaggatcacaagcgtctcctattttcggcgc
atccgctggcgattctactttctaccacgtcgcctgcctcatccgatctcgttccgcctg
caatgccgatgatgtgggatctctttgggttttgagacttgaggatcaaaccctcctgca
attccaattgcaacaaactcttgccgaagcgcagcgcttcgtgggtaaacagcacttggt
gattttctatgacgatgttatgtccggagaagtgcagcagagcaaggagtacgtcatcaa
ccgggaattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAGAACCTTCTGATGCGAGTCCCT 508 107 6777 Antisense
GTAGCTCCTCAATCAGTTGTTCAAC 529 455 6838 Antisense
GCACCAGCTACACCAATTGCGATCT 432 315 6871 Antisense
ATTGCGATCTCAGTTGCGACTACAC 439 7 6886 Antisense
CGACTACACAAGTTACACGGCCGGA 675 249 6902 Antisense
AACGTCGAGTTGGAGCTGTGGCCTA 673 143 6991 Antisense
AGGATCACAAGCGTCTCCTATTTTC 678 55 7047 Antisense
TTCCGCCTGCAATGCCGATGATGTG 217 699 7128 Antisense
GATGTGGGATCTCTTTGGGTTTTGA 198 409 7147 Antisense
CAAACCCTCCTGCAATTCCAATTGC 152 193 7183 Antisense
GGAGTACGTCATCAACCGGGAATTC 421 497 7302 Antisense
Sequence Source Affymetrix Proprietary Database