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[192111_at]

Description C42C1.10 /REP_DB=WormBase Gene ID /WP=CE16916 /TR=O44967 /GB=AAB97551.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=mitochondrial carrier protein
Cluster 6grp_highest_10_10 > 58      6grp_high1_10_10 > 85      4grp_highest_8_8 > 17      4grp_high_8_8 > 60      6grp_highest_nonorm > 84      6grp_total > 75      4grp_total > 59      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 473
1 2 3 4 range
A 470.5
(-0.4)
P 		538
(0.6)
P 		696.1
(3)
P 		299.5
(-3)
P 		397
B 505
(0.6)
P 		551.5
(1.3)
P 		662.5
(3)
P 		261.6
(-3)
P 		401
C 461.9
(1.5)
P 		532.3
(2.9)
P 		538.4
(3)
P 		223.3
(-3)
P 		315
avr 479.1
(0.5) 		540.6
(1.5) 		632.3
(3) 		261.5
(-3) 		371

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 438
1 2 3 4 5 6 range
A 464.5
(-3)
P 		502.6
(-2.3)
P 		777.2
(3)
P 		608.5
(-0.2)
P 		669.3
(0.9)
P 		710.4
(1.7)
P 		313
B 513.2
(-2.8)
P 		503.9
(-3)
P 		628.5
(-0.9)
P 		619.1
(-1)
P 		726.4
(0.8)
P 		853.2
(3)
P 		349
C 415.7
(-3)
P 		643.8
(1)
P 		557.9
(-0.5)
P 		672.5
(1.4)
P 		472.3
(-2)
P 		762.1
(3)
P 		346
avr 464.5
(-3) 		550.1
(-1.3) 		654.5
(0.7) 		633.4
(0.3) 		622.7
(0.1) 		775.2
(3) 		311
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 150
1 2 3 4 range
A 171.3
(2.5)
P 		116.8
(0.2)
P 		182
(3)
P 		43.8
(-3)
P 		138
B 161
(3)
P 		136.2
(1.6)
P 		153.5
(2.6)
P 		55.7
(-3)
P 		105
C 152.9
(1.6)
P 		153
(1.6)
P 		187.6
(3)
P 		37.6
(-3)
P 		150
avr 161.7
(2.4) 		135.3
(1.2) 		174.4
(3) 		45.7
(-3) 		129

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 233
1 2 3 4 5 6 range
A 85.6
(-3)
P 		178.8
(1.8)
P 		169.3
(1.3)
P 		154.3
(0.5)
P 		202
(3)
P 		173
(1.5)
P 		116
B 178.6
(-2.1)
P 		167.7
(-2.5)
P 		152.6
(-3)
P 		164
(-2.6)
P 		295.1
(2.2)
P 		318.2
(3)
P 		166
C 154.1
(-2.1)
P 		196.5
(0.1)
P 		142
(-2.7)
P 		135.2
(-3)
P 		152.8
(-2.1)
P 		255.1
(3)
P 		120
avr 139.4
(-3) 		181
(-0.7) 		154.6
(-2.2) 		151.2
(-2.4) 		216.6
(1.2) 		248.8
(3) 		109
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192111_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8517
Sequence Type Exemplar sequence
Representative Public ID C42C1.10 NCBI
Target Description C42C1.10 /REP_DB=WormBase Gene ID /WP=CE16916 /TR=O44967 /GB=AAB97551.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=mitochondrial carrier protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069937(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069937 NCBI Caenorhabditis elegans C42C1.16 (C42C1.16) mRNA, complete cds. 11/11 None
SNAP00000027940 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12283170:12287723:1 11/11 None
GENEFINDER00000027949 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12283170:12287723:1 11/11 None
C42C1.16 ENSEMBL cdna:known chromosome:CEL140:IV:12285384:12287723:1 gene:C42C1.16 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12283175-12287729(+) 98.77 100.0
Public Domain and Genome References
Gene Title
Ensembl C42C1.16
Entrez Gene 259879 Entrez gene
SwissProt Q95X51 EMBL-EBI
WormBase CE29223 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T32897 hypothetical protein C42C1.10 - Caenorhabditis elegans 0.0
blast CAE62219 Hypothetical protein CBG06270 [Caenorhabditis briggsae] 0.0
blast NP_502338 C42C1.16 [Caenorhabditis elegans] gb|AAL02465.1| Hypothetical protein C42C1.16 [Caenorhabditis elegans] 1.0E-168
blast T32897 hypothetical protein C42C1.10 - Caenorhabditis elegans 1.0E-163
Protein Domains
Database ID Description E-Value
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 2.3E-22
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 6.6E-31
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 1.0E-15
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 4.4E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502338.1 7 27-49,114-136,146-168,180-199,203-225,232-254,259-281
C42C1.16 7 27-49,114-136,146-168,180-199,203-225,232-254,259-281
SNAP00000027940 10 176-198,213-233,322-344,376-398,463-485,495-517,529-548,552-574,581-603,608-630
GENEFINDER00000027949 8 344-366,398-420,485-507,517-539,551-570,574-596,603-625,630-652
Sequence
Target Sequence 
>C. ELEGANS:192111_AT
atattgctcttgtctactttttctcaatggaaatgagaactatctgtgaaacatgggctc
ctctttacttgaatgaaaagaaaatgtcagctgatggatttcagtttctttacgagctgg
gaggacttgctggaactatgatcagtggacttgtgctcgaacgattagctggaaagatgg
gggtggatccatcgaggaggcttcttggcatcatttttacagtaatcatgatgattgttg
gatgtggagttttcaaatttgaggagtattcttctgtgctcggatttctgactggtttct
ttgtaaatggaagtatcaatatttggtgtctaattggatcacaagctggaactaaaagtg
tcgcaggaaccgtgtcggcgttcataagcttcatcgcatcagttggttcaatattcgccg
gatcaccactagcccatctcattgctacattttcatttcacgtgtttactatcctcttcg
tcacacaaattgtattcgttctctcaatttccagtctacaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATTGCTCTTGTCTACTTTTTCTC 412 19 1400 Antisense
GATCAGTGGACTTGTGCTCGAACGA 380 421 1539 Antisense
GAGGAGGCTTCTTGGCATCATTTTT 161 403 1593 Antisense
GAGTATTCTTCTGTGCTCGGATTTC 298 397 1663 Antisense
GTGTCGGCGTTCATAAGCTTCATCG 415 487 1771 Antisense
AGCTTCATCGCATCAGTTGGTTCAA 99 79 1786 Antisense
GTTGGTTCAATATTCGCCGGATCAC 89 437 1801 Antisense
AGCCCATCTCATTGCTACATTTTCA 240 83 1830 Antisense
CATTTCACGTGTTTACTATCCTCTT 520 215 1853 Antisense
CTATCCTCTTCGTCACACAAATTGT 326 225 1868 Antisense
GTTCTCTCAATTTCCAGTCTACAAA 440 443 1897 Antisense
Sequence Source Affymetrix Proprietary Database