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[192110_at] Leucine Rich Repeat (2 copies)

Description Y75B8A.5 /REP_DB=WormBase Gene ID /WP=CE23017 /TR=Q9XW74 /GB=CAA22095.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Leucine Rich Repeat (2 copies)
Cluster 6grp_highest_10_10 > 33      6grp_high1_10_10 > 23      4grp_high_8_8 > 37      6grp_highest_nonorm > 70      6grp_total > 31      4grp_total > 35      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 190.2
(-3)
P 		240.6
(3)
P 		196.3
(-2.3)
P 		228.4
(1.5)
P 		50
B 158.8
(-3)
P 		269.9
(3)
P 		165.3
(-2.6)
M 		229.8
(0.8)
P 		111
C 207.5
(1.7)
P 		217.4
(3)
M 		176.3
(-2.2)
P 		170.3
(-3)
P 		47
avr 185.5
(-2.4) 		242.6
(3) 		179.3
(-3) 		209.5
(-0.1) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 225
1 2 3 4 5 6 range
A 297.6
(2.2)
P 		280.2
(1.6)
P 		322
(3)
P 		250.4
(0.6)
P 		203.7
(-1)
P 		142.6
(-3)
P 		179
B 211.7
(-1.3)
P 		330.5
(3)
P 		285.2
(1.4)
P 		314.2
(2.4)
P 		216.7
(-1.1)
P 		162.8
(-3)
P 		168
C 266.7
(0.1)
P 		367.3
(3)
P 		244
(-0.6)
P 		311
(1.4)
P 		163.5
(-2.9)
P 		161.4
(-3)
P 		206
avr 258.7
(0.6) 		326
(3) 		283.7
(1.5) 		291.9
(1.8) 		194.6
(-1.6) 		155.6
(-3) 		170
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 69.2
(3)
P 		52.2
(0.2)
P 		51.3
(-0)
P 		33.4
(-3)
P 		36
B 50.6
(-0.4)
P 		66.7
(3)
P 		38.3
(-3)
M 		49
(-0.7)
P 		28
C 68.7
(3)
P 		62.5
(2.1)
M 		61.5
(1.9)
P 		28.7
(-3)
P 		40
avr 62.8
(3) 		60.5
(2.5) 		50.4
(0.1) 		37
(-3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 54.9
(-1.1)
P 		99.7
(3)
P 		70.1
(0.3)
P 		63.5
(-0.3)
P 		61.5
(-0.5)
P 		34.7
(-3)
P 		65
B 73.6
(-1.4)
P 		110
(3)
P 		69.2
(-2)
P 		83.2
(-0.3)
P 		88
(0.3)
P 		60.7
(-3)
P 		49
C 98.9
(1.7)
P 		112.1
(3)
P 		62.1
(-2.1)
P 		62.5
(-2)
P 		52.9
(-3)
P 		54
(-2.9)
P 		59
avr 75.8
(-0.3) 		107.3
(3) 		67.1
(-1.2) 		69.7
(-0.9) 		67.5
(-1.2) 		49.8
(-3) 		58
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192110_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6762
Sequence Type Exemplar sequence
Representative Public ID Y75B8A.5 NCBI
Target Description Y75B8A.5 /REP_DB=WormBase Gene ID /WP=CE23017 /TR=Q9XW74 /GB=CAA22095.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Leucine Rich Repeat (2 copies)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067177(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067177 NCBI Caenorhabditis elegans Y75B8A.5 (Y75B8A.5) mRNA, complete cds. 11/11 None
GENEFINDER00000020170 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12114131:12118345:-1 11/11 None
Y75B8A.5 ENSEMBL cdna:known chromosome:CEL140:III:12114131:12118345:-1 gene:Y75B8A.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12114126-12118341(-) 100.0 100.0
Public Domain and Genome References
Gene Title Leucine Rich Repeat (2 copies)
Ensembl Y75B8A.5
Entrez Gene 190700 Entrez gene
SwissProt Q9XW74 EMBL-EBI
WormBase CE23017 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA22095 Hypothetical protein Y75B8A.5 [Caenorhabditis elegans] ref|NP_499578.1| Y75B8A.5 [Caenorhabditis elegans] 0.0
blast CAE75089 Hypothetical protein CBG23009 [Caenorhabditis briggsae] 1.0E-147
blast CAE75089 Hypothetical protein CBG23009 [Caenorhabditis briggsae] 1.0E-129
blast CAE75091 Hypothetical protein CBG23012 [Caenorhabditis briggsae] 8.0E-50
blast CAE75091 Hypothetical protein CBG23012 [Caenorhabditis briggsae] 9.0E-50
Protein Domains
Database ID Description E-Value
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.13
Sequence
Target Sequence 
>C. ELEGANS:192110_AT
cagcaaagttccttctatagcacccgatgcattttccggcctaacaacgatccaagtaat
tgaactacacgcctgccaacttggaacaatttctgcacgagcatttgccaatgttgagaa
tctgggagaacttaaaatattgagaaatacaatcggagacttggatacatctgaatcaat
tatgtcaagagcacttaaaacaagaatagaagagaatacattggagtgtagttgtgggat
gaaatggatgactagtgttgaggagatgtctgacatcaacttctgtagtacaactgcatc
attccgctcgattcgttcatttatcaaagcaaaatgtctcaatccatcacaagaaatttc
aagaaaaacgaatcatcttccatcaatctcttctttttcttcttcttctattgtaaattt
ctattttttatcacttgtatggtatttctcgaaaacggatatcaataacttacaaaatcg
ctttgacaagaatttgatgccttgtcggaatacctttgctttgctcccatggcaaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGCAAAGTTCCTTCTATAGCACCC 658 203 741 Antisense
TATAGCACCCGATGCATTTTCCGGC 553 659 756 Antisense
TTTTCCGGCCTAACAACGATCCAAG 224 673 772 Antisense
CTACACGCCTGCCAACTTGGAACAA 383 227 805 Antisense
ATTTCTGCACGAGCATTTGCCAATG 510 15 829 Antisense
GATGTCTGACATCAACTTCTGTAGT 453 409 1005 Antisense
GTAGTACAACTGCATCATTCCGCTC 303 457 1025 Antisense
CATTCCGCTCGATTCGTTCATTTAT 463 217 1040 Antisense
CGAATCATCTTCCATCAATCTCTTC 7 255 1109 Antisense
GATGCCTTGTCGGAATACCTTTGCT 310 415 1236 Antisense
CTTTGCTTTGCTCCCATGGCAAAAT 481 223 1254 Antisense
Sequence Source Affymetrix Proprietary Database