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[192108_at]

Description C54G10.4 /REP_DB=WormBase Gene ID /WP=CE05519 /TR=Q18844 /GB=CAA99811.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=mitochrondrial carrier protein
Cluster 6grp_high1_10_10 > 66      4grp_high_8_8 > 01      6grp_total > 66      4grp_total > 22      6grp_high1_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 375
1 2 3 4 range
A 401.2
(3)
P 		120.6
(-3)
A 		135.4
(-2.7)
A 		338.9
(1.7)
P 		281
B 443.7
(2.3)
P 		119.9
(-3)
M 		152.8
(-2.5)
P 		486.8
(3)
P 		367
C 462.6
(2.5)
P 		136.5
(-3)
P 		147.4
(-2.8)
P 		494.4
(3)
P 		358
avr 435.8
(2.9) 		125.7
(-3) 		145.2
(-2.6) 		440
(3) 		314

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 321
1 2 3 4 5 6 range
A 177.8
(-3)
A 		187.9
(-2.7)
P 		240.4
(-1.2)
P 		199.8
(-2.4)
P 		178.4
(-3)
A 		392
(3)
P 		214
B 197.2
(-1.5)
P 		158.5
(-2.6)
P 		187.3
(-1.8)
P 		198.7
(-1.4)
P 		146
(-3)
P 		347.7
(3)
P 		202
C 179.7
(-2.3)
P 		170.2
(-2.5)
P 		251
(-1)
P 		241.1
(-1.2)
A 		143.6
(-3)
P 		464.2
(3)
P 		321
avr 184.9
(-2.3) 		172.2
(-2.6) 		226.2
(-1.3) 		213.2
(-1.6) 		156
(-3) 		401.3
(3) 		245
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 127
1 2 3 4 range
A 146.1
(3)
P 		26.2
(-3)
A 		35.4
(-2.5)
A 		49.6
(-1.8)
P 		120
B 141.5
(3)
P 		29.6
(-3)
M 		35.4
(-2.7)
P 		103.7
(1)
P 		112
C 153.1
(3)
P 		39.2
(-3)
P 		51.4
(-2.4)
P 		83.4
(-0.7)
P 		114
avr 146.9
(3) 		31.7
(-3) 		40.7
(-2.5) 		78.9
(-0.5) 		115

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 123
1 2 3 4 5 6 range
A 32.8
(-3)
A 		66.8
(0.3)
P 		52.3
(-1.1)
P 		50.7
(-1.3)
P 		53.8
(-1)
A 		95.4
(3)
P 		63
B 68.6
(-1.4)
P 		52.8
(-2.5)
P 		45.5
(-3)
P 		52.6
(-2.5)
P 		59.3
(-2)
P 		129.6
(3)
P 		84
C 66.6
(-1.9)
P 		51.9
(-2.7)
P 		63.9
(-2)
P 		48.5
(-2.9)
A 		46.5
(-3)
P 		155.4
(3)
P 		109
avr 56
(-2.6) 		57.2
(-2.5) 		53.9
(-2.7) 		50.6
(-3) 		53.2
(-2.8) 		126.8
(3) 		76
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192108_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13736
Sequence Type Exemplar sequence
Representative Public ID C54G10.4 NCBI
Target Description C54G10.4 /REP_DB=WormBase Gene ID /WP=CE05519 /TR=Q18844 /GB=CAA99811.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=mitochrondrial carrier protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182334(11), NM_074220(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182334 NCBI Caenorhabditis elegans C54G10.4b (C54G10.4) mRNA, complete cds. 11/11 None
NM_074220 NCBI Caenorhabditis elegans C54G10.4a (C54G10.4) mRNA, complete cds. 11/11 None
SNAP00000017888 ENSEMBL cdna:SNAP chromosome:CEL140:V:14656401:14658989:-1 11/11 None
GENEFINDER00000017892 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14656401:14660588:-1 11/11 None
C54G10.4b ENSEMBL cdna:known chromosome:CEL140:V:14656131:14660588:-1 gene:C54G10.4 11/11 None
C54G10.4a ENSEMBL cdna:known chromosome:CEL140:V:14656143:14660763:-1 gene:C54G10.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14657357-14660588(-) 100.0 100.0
Public Domain and Genome References
Ensembl C54G10.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD56651 Hypothetical protein C54G10.4b [Caenorhabditis elegans] ref|NP_872134.1| C54G10.4b [Caenorhabditis elegans] 0.0
blast CAA99811 Hypothetical protein C54G10.4a [Caenorhabditis elegans] ref|NP_506621.1| C54G10.4a [Caenorhabditis elegans] 1.0E-165
blast CAE60856 Hypothetical protein CBG04567 [Caenorhabditis briggsae] 1.0E-163
blast CAD56651 Hypothetical protein C54G10.4b [Caenorhabditis elegans] ref|NP_872134.1| C54G10.4b [Caenorhabditis elegans] 1.0E-162
blast CAD56651 Hypothetical protein C54G10.4b [Caenorhabditis elegans] ref|NP_872134.1| C54G10.4b [Caenorhabditis elegans] 1.0E-160
Protein Domains
Database ID Description E-Value
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 1.9E-29
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 2.3E-29
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 1.3E-26
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 2.3E-29
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 1.3E-26
Sequence
Target Sequence 
>C. ELEGANS:192108_AT
agtgtaatcgcagcgccgacggaaagaatcaagcttcttctccagattcaagatgataaa
gctcacacgaaattcaatgggccgatcgatgcaacaaagcaattgctaagaactcatgga
ttgaaatctttgacaagaggtttccttgccacagttgctcgtgatgctccagcattcggc
gtctactttgcttcatatgaatggatggctcgatcaatgtgtaaggatggagaaacaagt
accctatcaagtggtcaacttctgtttgctggtggtactgctggaatgctttcatggttg
ttcaattatcaaactgatattataaagtcaagattccaagctgataattcgtacaaatca
tacatgcattgcatcaagcaaacatatctggaacgaggctatcgaggattctttgttggt
ctcaattcggcgcttatcagagccttcccatcaaacgcagcaacattcttcacagtcgaa
tggacatatcgtattcttcttgacttcaacgttatcgataatgtaactaaggaagccgaa
aaaatatgcgctgaaagccaacttctaccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTGTAATCGCAGCGCCGACGGAAA 273 57 340 Antisense
AATTCAATGGGCCGATCGATGCAAC 83 177 410 Antisense
CAAGAGGTTTCCTTGCCACAGTTGC 491 183 473 Antisense
ATTCGGCGTCTACTTTGCTTCATAT 641 9 513 Antisense
AAGTGGTCAACTTCTGTTTGCTGGT 636 159 588 Antisense
GGTGGTACTGCTGGAATGCTTTCAT 525 499 610 Antisense
TTCTTTGTTGGTCTCAATTCGGCGC 327 691 748 Antisense
AATTCGGCGCTTATCAGAGCCTTCC 701 175 763 Antisense
CTTCCCATCAAACGCAGCAACATTC 499 219 783 Antisense
GACATATCGTATTCTTCTTGACTTC 279 371 822 Antisense
ATGCGCTGAAAGCCAACTTCTACCG 589 41 885 Antisense
Sequence Source Affymetrix Proprietary Database