[Home] | [Total List]

[192106_at] EGF receptor/notch-like protein

Description C34C6.3 /REP_DB=WormBase Gene ID /WP=CE03051 /TR=Q18424 /GB=CAA91258.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=EGF receptor-notch-like protein
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 80      4grp_highest_8_8 > 01      4grp_high_8_8 > 45      6grp_highest_nonorm > 52      6grp_total > 82      4grp_total > 50      6grp_high1_sub > 02_03_04_05      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 491
1 2 3 4 range
A 464.2
(-3)
P 		881.2
(3)
P 		750.2
(1.1)
P 		553.9
(-1.7)
P 		417
B 476.9
(-3)
P 		955.6
(3)
P 		601.4
(-1.4)
P 		515
(-2.5)
P 		479
C 519.6
(-2.1)
P 		668.8
(1.8)
P 		716.5
(3)
P 		486.5
(-3)
P 		230
avr 486.9
(-3) 		835.2
(3) 		689.4
(0.5) 		518.5
(-2.5) 		348

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 696
1 2 3 4 5 6 range
A 357.5
(-2.6)
P 		774.6
(1.8)
P 		534.7
(-0.7)
P 		834.8
(2.4)
P 		891.2
(3)
P 		316.3
(-3)
P 		575
B 541.5
(-0.6)
P 		738.2
(1.4)
P 		852.1
(2.5)
P 		888.1
(2.9)
P 		896.4
(3)
P 		311.6
(-3)
P 		585
C 462.7
(-1.7)
P 		1004.2
(3)
P 		711.6
(0.4)
P 		1007.6
(3)
P 		720.6
(0.5)
P 		314.4
(-3)
P 		693
avr 453.9
(-1.6) 		839
(2.3) 		699.5
(0.9) 		910.2
(3) 		836.1
(2.3) 		314.1
(-3) 		596
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 169
1 2 3 4 range
A 169
(1.6)
P 		191.3
(2.7)
P 		196.1
(3)
P 		81.1
(-3)
P 		115
B 152.1
(-1)
P 		236
(3)
P 		139.4
(-1.6)
P 		109.8
(-3)
P 		126
C 172
(0.2)
P 		192.3
(0.9)
P 		249.7
(3)
P 		82
(-3)
P 		168
avr 164.4
(0.8) 		206.5
(3) 		195.1
(2.4) 		91
(-3) 		116

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 298
1 2 3 4 5 6 range
A 65.9
(-3)
P 		275.5
(3)
P 		116.4
(-1.6)
P 		211.7
(1.2)
P 		268.9
(2.8)
P 		77
(-2.7)
P 		210
B 188.4
(-1.3)
P 		245.7
(0.1)
P 		206.9
(-0.8)
P 		235.2
(-0.1)
P 		364.2
(3)
P 		116.2
(-3)
P 		248
C 171.5
(-1)
P 		306.4
(3)
P 		181.1
(-0.7)
P 		202.6
(-0.1)
P 		233.2
(0.8)
P 		105.2
(-3)
P 		201
avr 141.9
(-1.7) 		275.9
(2.6) 		168.1
(-0.8) 		216.5
(0.7) 		288.8
(3) 		99.5
(-3) 		189
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192106_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3264
Sequence Type Exemplar sequence
Representative Public ID C34C6.3 NCBI
Target Description C34C6.3 /REP_DB=WormBase Gene ID /WP=CE03051 /TR=Q18424 /GB=CAA91258.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=EGF receptor-notch-like protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063444(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063444 NCBI Caenorhabditis elegans C34C6.3 (C34C6.3) mRNA, complete cds. 11/11 None
SNAP00000033101 ENSEMBL cdna:SNAP chromosome:CEL140:II:8691845:8693954:1 11/11 None
GENEFINDER00000033109 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8691845:8693954:1 11/11 None
C34C6.3 ENSEMBL cdna:known chromosome:CEL140:II:8691872:8693954:1 gene:C34C6.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8691868-8693951(+) 100.0 100.0
Public Domain and Genome References
Gene Title EGF receptor/notch-like protein
Ensembl C34C6.3
Entrez Gene 183196 Entrez gene
SwissProt Q18424 EMBL-EBI
WormBase CE35832 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6584 catecholamine metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4500 dopamine beta-monooxygenase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91258 Hypothetical protein C34C6.3 [Caenorhabditis elegans] ref|NP_495845.2| C34C6.3 [Caenorhabditis elegans] 0.0
blast CAE65942 Hypothetical protein CBG11119 [Caenorhabditis briggsae] 0.0
blast XP_783867 PREDICTED: similar to CG12781-PA, isoform A, partial [Strongylocentrotus purpuratus] 1.0E-35
blast XP_783867 PREDICTED: similar to CG12781-PA, isoform A, partial [Strongylocentrotus purpuratus] 1.0E-34
Protein Domains
Database ID Description E-Value
Pfam IPR006209 EMBL-EBI EGF-like domain 7.0E-4
Pfam IPR005018 EMBL-EBI DOMON domain 2.3E-29
Pfam IPR006209 EMBL-EBI EGF-like domain 7.0E-4
Pfam IPR005018 EMBL-EBI DOMON domain 2.3E-29
Pfam IPR006209 EMBL-EBI EGF-like domain 7.0E-4
Pfam IPR005018 EMBL-EBI DOMON domain 2.3E-29
Sequence
Target Sequence 
>C. ELEGANS:192106_AT
gagcttggtcttaaatcctccttacacccaatggattgtgttgatgttataatggcttca
gttaggaacgacagactttttatttccgacttctattctcgtgatcgttcaactcctctt
gaagattattggtatgacggtgaaatgagtttatcagctgcttatggaacacaacaagat
ggtagatcaattgttatgttcaggagagagcttagagaatttgaaccaaccgatcatcca
ttgggaccaaatgaaatcctgattgtctggtcaaaaggggatagtcaaatgggttccaac
ttccagggaatcaacagaggggtcgagaaactcaaattggcagaagttgtcaatgtcaca
tttgagcaaccgtcacagccaaccaatgagcttgcttttggagttaaaaacgtggttcat
gatcgcctggaacccatgacagtatctacttcaacaactcgtcagagtccatcaacaatc
aatcatgtacctgaaatgacaattagaaatactatagctccaacaacaaccacctctacc
gaatctgaaaactcatcagctactctgcaagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCTTGGTCTTAAATCCTCCTTAC 64 389 1009 Antisense
TCCTCCTTACACCCAATGGATTGTG 323 593 1024 Antisense
GACAGACTTTTTATTTCCGACTTCT 195 325 1078 Antisense
GACTTCTATTCTCGTGATCGTTCAA 436 371 1096 Antisense
GAACCAACCGATCATCCATTGGGAC 394 343 1231 Antisense
GTCACATTTGAGCAACCGTCACAGC 247 465 1363 Antisense
CACAGCCAACCAATGAGCTTGCTTT 93 195 1382 Antisense
AAAACGTGGTTCATGATCGCCTGGA 652 129 1415 Antisense
GATCGCCTGGAACCCATGACAGTAT 446 417 1429 Antisense
ACTCGTCAGAGTCCATCAACAATCA 690 97 1465 Antisense
AAAACTCATCAGCTACTCTGCAAGT 346 129 1556 Antisense
Sequence Source Affymetrix Proprietary Database