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[192102_s_at]

Description F01E11.5 /REP_DB=WormBase Gene ID /WP=CE07014 /TR=SW:Q19084 /GB=AAA83574.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster 6grp_high1_10_10 > 15      6grp_total > 26      4grp_total > 14      6grp_high1_sub > De      6grp_total_sub > Cup      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 377
1 2 3 4 range
A 229.9
(0.3)
P 		64.7
(-2.6)
A 		38.4
(-3)
A 		390.4
(3)
P 		352
B 216
(1.9)
P 		67.5
(-2.2)
A 		37.2
(-3)
A 		254.8
(3)
P 		218
C 226.3
(1)
P 		13.9
(-3)
A 		40.5
(-2.5)
M 		330.7
(3)
P 		317
avr 224.1
(0.9) 		48.7
(-2.8) 		38.7
(-3) 		325.3
(3) 		287

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 193
1 2 3 4 5 6 range
A 199
(3)
P 		154.9
(1)
P 		91.1
(-1.8)
P 		64.9
(-3)
A 		83.3
(-2.2)
P 		82.5
(-2.2)
P 		134
B 239.7
(3)
P 		188.1
(1.3)
P 		92.9
(-1.8)
P 		87.5
(-2)
P 		57.1
(-3)
P 		95.6
(-1.7)
P 		183
C 183.2
(2.2)
P 		204
(3)
P 		46.7
(-3)
A 		88.3
(-1.4)
P 		65.6
(-2.3)
A 		56.5
(-2.6)
P 		157
avr 207.3
(3) 		182.3
(1.9) 		76.9
(-2.6) 		80.2
(-2.5) 		68.7
(-3) 		78.2
(-2.6) 		139
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 83.7
(3)
P 		14
(-2.7)
A 		10.1
(-3)
A 		57.1
(0.8)
P 		74
B 68.9
(3)
P 		16.7
(-2.2)
A 		8.6
(-3)
A 		54.3
(1.5)
P 		60
C 74.9
(3)
P 		4
(-3)
A 		14.1
(-2.1)
M 		55.8
(1.4)
P 		71
avr 75.8
(3) 		11.6
(-2.9) 		10.9
(-3) 		55.7
(1.1) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 36.7
(0.1)
P 		55.1
(3)
P 		19.8
(-2.5)
P 		16.5
(-3)
A 		25.1
(-1.7)
P 		20.1
(-2.4)
P 		39
B 83.4
(3)
P 		62.6
(0.9)
P 		22.6
(-3)
P 		23.2
(-2.9)
P 		23.2
(-2.9)
P 		35.7
(-1.7)
P 		61
C 67.9
(3)
P 		62.2
(2.4)
P 		11.9
(-3)
A 		17.8
(-2.4)
P 		21.2
(-2)
A 		18.9
(-2.3)
P 		56
avr 62.7
(3) 		60
(2.6) 		18.1
(-3) 		19.2
(-2.9) 		23.2
(-2.3) 		24.9
(-2.1) 		45
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192102_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17173
Sequence Type Exemplar sequence
Representative Public ID F01E11.5 NCBI
Target Description F01E11.5 /REP_DB=WormBase Gene ID /WP=CE07014 /TR=SW:Q19084 /GB=AAA83574.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029350(11), NM_001029351(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029350 NCBI Caenorhabditis elegans F01E11.5a (F01E11.5) mRNA, complete cds. 11/11 None
NM_001029351 NCBI Caenorhabditis elegans F01E11.5b (F01E11.5) mRNA, complete cds. 11/11 None
F01E11.5a ENSEMBL cdna:known chromosome:CEL140:X:6996806:7005523:-1 gene:F01E11.5 11/11 None
F01E11.5b ENSEMBL cdna:known chromosome:CEL140:X:6997036:7001936:-1 gene:F01E11.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6997035-7001956(-) 100.0 100.0
Public Domain and Genome References
Ensembl F01E11.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA83574 Hypothetical protein F01E11.5a [Caenorhabditis elegans] ref|NP_001024521.1| F01E11.5a [Caenorhabditis elegans] 0.0
blast ABA03119 Hypothetical protein F01E11.5c [Caenorhabditis elegans] sp|Q19084|YDBM_CAEEL Probable G-protein coupled receptor F01E11.5 0.0
blast CAE65830 Hypothetical protein CBG10952 [Caenorhabditis briggsae] 0.0
blast AAP40542 Hypothetical protein F01E11.5b [Caenorhabditis elegans] ref|NP_001024522.1| F01E11.5b [Caenorhabditis elegans] 1.0E-160
blast ABA03119 Hypothetical protein F01E11.5c [Caenorhabditis elegans] sp|Q19084|YDBM_CAEEL Probable G-protein coupled receptor F01E11.5 1.0E-160
Protein Domains
Database ID Description E-Value
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 8.8E-92
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 2.1E-46
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 7.0E-92
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024521.1 7 24-43,55-77,92-114,135-157,187-209,382-404,419-438
NP_001024522.1 4 9-31,61-83,262-284,299-318
F01E11.5a 7 24-43,55-77,92-114,135-157,187-209,388-410,425-444
F01E11.5b 4 9-31,61-83,262-284,299-318
Sequence
Target Sequence 
>C. ELEGANS:192102_S_AT
gtgactgcaacggtgactggtccaactgaagctccatacatgaaaagagaagcgaaaatc
tcaaaatctgtaccaattgaaaaagaatcggcgattcaaaaacgagaagctaagcctatg
aggagtgttatggcgatcagttatgaaaaagtaaaacgtcataagaataggaaagagcgt
atataccgtaagagtctacagcgaaagcctaaggctatatcagcagccaaagaaagacgt
ggagtcaaagtacttggcatcatcctaggatgcttcacagtttgctgggctccatttttc
acaatgtatgtgctggttcaattttgcaaagattgcagtccgaatgctcacattgagatg
ttcattacttggcttgggtacagcaattccgcaatgaatcctatcatttatacggtattt
aacagagactatcaaattgctttaaaacgccttttcacttcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGACTGCAACGGTGACTGGTCCAA 418 483 985 Antisense
GAGGAGTGTTATGGCGATCAGTTAT 162 403 1104 Antisense
AGAGTCTACAGCGAAAGCCTAAGGC 118 69 1175 Antisense
AAAGTACTTGGCATCATCCTAGGAT 264 121 1231 Antisense
GGATGCTTCACAGTTTGCTGGGCTC 707 513 1252 Antisense
AATGTATGTGCTGGTTCAATTTTGC 549 163 1287 Antisense
GATTGCAGTCCGAATGCTCACATTG 196 433 1315 Antisense
GAGATGTTCATTACTTGGCTTGGGT 77 397 1339 Antisense
TGGCTTGGGTACAGCAATTCCGCAA 515 543 1354 Antisense
GCAATTCCGCAATGAATCCTATCAT 258 321 1367 Antisense
TGCTTTAAAACGCCTTTTCACTTCG 573 579 1422 Antisense
Sequence Source Affymetrix Proprietary Database