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[192101_at]

Description C37H5.6 /REP_DB=WormBase Gene ID /WP=CE08630 /TR=SW:P91134 /GB=AAB42370.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=adenylosuccinate synthetase
Cluster 6grp_highest_10_10 > 80      6grp_high1_10_10 > 18      4grp_highest_8_8 > 39      4grp_high_8_8 > 04      6grp_highest_nonorm > 03      6grp_total > 06      4grp_total > 04      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9303
1 2 3 4 range
A 4610.8
(-1.1)
P 		1895.5
(-2.9)
P 		1722.7
(-3)
P 		10897
(3)
P 		9174
B 4559.6
(-0.9)
P 		1822.1
(-2.8)
P 		1594.1
(-3)
P 		10146.3
(3)
P 		8552
C 4076.6
(-1.1)
P 		2313.8
(-2.6)
P 		1788.2
(-3)
P 		9019.3
(3)
P 		7231
avr 4415.7
(-1) 		2010.5
(-2.8) 		1701.7
(-3) 		10020.9
(3) 		8319

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3626
1 2 3 4 5 6 range
A 4293.8
(3)
P 		3182.9
(-0.2)
P 		2219.9
(-3)
P 		2689.5
(-1.6)
P 		3186.7
(-0.2)
P 		2377.6
(-2.5)
P 		2074
B 4588.8
(3)
P 		3847.8
(1)
P 		2616.2
(-2.3)
P 		2706.1
(-2)
P 		3467.2
(0)
P 		2334.5
(-3)
P 		2254
C 5780
(3)
P 		3511.3
(-0.8)
P 		2282.5
(-2.8)
P 		2697.6
(-2.1)
P 		2896.7
(-1.8)
P 		2154.3
(-3)
P 		3626
avr 4887.5
(3) 		3514
(-0.2) 		2372.9
(-2.8) 		2697.7
(-2.1) 		3183.5
(-0.9) 		2288.8
(-3) 		2599
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1793
1 2 3 4 range
A 1678.8
(3)
P 		411.5
(-3)
P 		450.4
(-2.8)
P 		1595.1
(2.6)
P 		1267
B 1454
(0.6)
P 		450
(-2.7)
P 		369.4
(-3)
P 		2162.2
(3)
P 		1793
C 1349.5
(1.9)
P 		665.2
(-2.7)
P 		623.2
(-3)
P 		1520.8
(3)
P 		898
avr 1494.1
(1.8) 		508.9
(-2.9) 		481
(-3) 		1759.4
(3) 		1278

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1659
1 2 3 4 5 6 range
A 791.5
(-0.1)
P 		1132
(3)
P 		483.4
(-3)
P 		682.1
(-1.2)
P 		961.6
(1.4)
P 		578.9
(-2.1)
P 		649
B 1596.7
(3)
P 		1280.8
(1)
P 		635.3
(-3)
P 		716.7
(-2.5)
P 		1408.7
(1.8)
P 		870.5
(-1.5)
P 		961
C 2142.4
(3)
P 		1071.4
(-1)
P 		580.9
(-2.9)
P 		542.5
(-3)
P 		937.3
(-1.5)
P 		721.2
(-2.3)
P 		1600
avr 1510.2
(3) 		1161.4
(0.8) 		566.5
(-3) 		647.1
(-2.5) 		1102.5
(0.4) 		723.5
(-2) 		944
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192101_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15855
Sequence Type Exemplar sequence
Representative Public ID C37H5.6 NCBI
Target Description C37H5.6 /REP_DB=WormBase Gene ID /WP=CE08630 /TR=SW:P91134 /GB=AAB42370.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=adenylosuccinate synthetase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171451(11), NM_171450(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171451 NCBI Caenorhabditis elegans C37H5.6b (C37H5.6) mRNA, complete cds. 11/11 None
NM_171450 NCBI Caenorhabditis elegans C37H5.6a (C37H5.6) mRNA, complete cds. 11/11 None
SNAP00000016580 ENSEMBL cdna:SNAP chromosome:CEL140:V:4818967:4823054:-1 11/11 None
GENEFINDER00000016597 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4819255:4823054:-1 10/11 None
C37H5.6b.1 ENSEMBL cdna:known chromosome:CEL140:V:4818580:4821766:-1 gene:C37H5.6 11/11 None
C37H5.6b.3 ENSEMBL cdna:known chromosome:CEL140:V:4818580:4823158:-1 gene:C37H5.6 11/11 None
C37H5.6b.2 ENSEMBL cdna:known chromosome:CEL140:V:4818580:4821773:-1 gene:C37H5.6 11/11 None
C37H5.6b.4 ENSEMBL cdna:known chromosome:CEL140:V:4818580:4821773:-1 gene:C37H5.6 11/11 None
C37H5.6a ENSEMBL cdna:known chromosome:CEL140:V:4818967:4823054:-1 gene:C37H5.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4818966-4823054(-) 100.0 100.0
Public Domain and Genome References
Ensembl C37H5.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM29668 Hypothetical protein C37H5.6a [Caenorhabditis elegans] ref|NP_741529.1| C37H5.6a [Caenorhabditis elegans] 0.0
blast AAB42370 Hypothetical protein C37H5.6b [Caenorhabditis elegans] ref|NP_741530.1| C37H5.6b [Caenorhabditis elegans] sp|P91134|PURA_CAEEL Probable adenylosuccinate synthetase (IMP--aspartate ligase) (AdSS) (AMPSase) 0.0
blast CAE64199 Hypothetical protein CBG08829 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001114 EMBL-EBI Adenylosuccinate synthetase 1.0E-126
Pfam IPR001114 EMBL-EBI Adenylosuccinate synthetase 1.0E-126
Pfam IPR001114 EMBL-EBI Adenylosuccinate synthetase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:192101_AT
tatccatacgtgacatcttccaactccaccgtcggaggtgcttgcacaggaatcggagtt
ccaccaaccgccgtcggaaacgttatcggtgttgtgaaggcttatcagacccgcgtcgga
accggtccattcccaacagaattgttcgattctgatggtgagaagcttcagacgatcgga
aaagaagttggagtaacgactggacgtaaacgtcgttgtggatggattgatcttttcttg
ctccgtcgctcggcgatgatcaatgggtacacagcgatcgctctgacgaagctcgatatt
cttgatactttcccaacaatcaaggtggctgtcggctacaagctcaacggacaggtgctc
tcttcaccaccggctcaagccaatgcctggggagccattgaggtcgaatataaggaattc
gagggatggaacgagccgactgtcggtgtgagaaagttcgaggatctcccggaaaagtgc
cggcaatatgtgaaattcattgaggatttcatcaaggtgccgatcgtgtacattggcgtc
g

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATCCATACGTGACATCTTCCAACT 503 657 808 Antisense
CAACTCCACCGTCGGAGGTGCTTGC 393 183 828 Antisense
GTTGTGAAGGCTTATCAGACCCGCG 556 435 898 Antisense
ATGGATTGATCTTTTCTTGCTCCGT 671 51 1029 Antisense
CTCCGTCGCTCGGCGATGATCAATG 286 235 1048 Antisense
TCAATGGGTACACAGCGATCGCTCT 406 621 1067 Antisense
GCTCGATATTCTTGATACTTTCCCA 555 299 1098 Antisense
TCAAGGTGGCTGTCGGCTACAAGCT 566 631 1127 Antisense
TCAACGGACAGGTGCTCTCTTCACC 441 631 1151 Antisense
CTCAAGCCAATGCCTGGGGAGCCAT 657 225 1181 Antisense
GTGCCGATCGTGTACATTGGCGTCG 384 477 1324 Antisense
Sequence Source Affymetrix Proprietary Database