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[192100_at] clathrin coat assembly protein

Description F53H8.1 /REP_DB=WormBase Gene ID /WP=CE04654 /TR=Q20736 /GB=AAA82343.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=clathrin coat assembly protein
Cluster 6grp_highest_10_10 > 33      6grp_high1_10_10 > 23      4grp_highest_8_8 > 09      4grp_high_8_8 > 61      6grp_highest_nonorm > 51      6grp_total > 40      4grp_total > 58      6grp_highest_sub > 02      6grp_cgc > 72      6grp_high1_sub > 02      6grp_cgc_sub > 02      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 222
1 2 3 4 range
A 609.7
(2.2)
P 		599.6
(1.8)
P 		630.1
(3)
P 		478.6
(-3)
P 		152
B 594.7
(1.9)
P 		593.9
(1.8)
P 		612.1
(3)
P 		520.5
(-3)
P 		92
C 505.9
(-2.5)
P 		700.5
(3)
P 		689.7
(2.7)
P 		488.8
(-3)
P 		212
avr 570.1
(0) 		631.3
(2.5) 		644
(3) 		496
(-3) 		148

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 339
1 2 3 4 5 6 range
A 672.2
(1.3)
P 		709.7
(2)
P 		454.1
(-3)
P 		760.5
(3)
P 		510.8
(-1.9)
P 		503.9
(-2)
P 		306
B 543.9
(-0.1)
P 		628.4
(3)
P 		601.2
(2)
P 		527.1
(-0.7)
P 		465
(-3)
P 		491.4
(-2)
P 		163
C 582.9
(-0.1)
P 		610.6
(0.4)
P 		753.1
(3)
P 		571.6
(-0.3)
P 		423.6
(-3)
P 		421.4
(-3)
P 		332
avr 599.7
(1.4) 		649.6
(3) 		602.8
(1.5) 		619.7
(2) 		466.5
(-3) 		472.2
(-2.8) 		183
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 170
1 2 3 4 range
A 222
(3)
P 		130.2
(-0.6)
P 		164.7
(0.7)
P 		70.1
(-3)
P 		152
B 189.6
(3)
P 		146.7
(-0.3)
P 		141.8
(-0.6)
P 		110.9
(-3)
P 		79
C 167.5
(0.2)
P 		201.4
(1.5)
P 		240.4
(3)
P 		82.4
(-3)
P 		158
avr 193
(3) 		159.4
(1.1) 		182.3
(2.4) 		87.8
(-3) 		105

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 154
1 2 3 4 5 6 range
A 123.9
(-2)
P 		252.4
(3)
P 		98.9
(-3)
P 		192.9
(0.7)
P 		154.1
(-0.8)
P 		122.7
(-2.1)
P 		154
B 189.2
(1.3)
P 		209.2
(3)
P 		146
(-2.4)
P 		139.6
(-3)
P 		188.9
(1.3)
P 		183.2
(0.8)
P 		70
C 216.1
(3)
P 		186.3
(1.2)
P 		191.7
(1.6)
P 		114.9
(-3)
P 		137.1
(-1.7)
P 		141.1
(-1.4)
P 		101
avr 176.4
(-0.4) 		216
(3) 		145.5
(-3) 		149.1
(-2.7) 		160
(-1.8) 		149
(-2.7) 		71
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192100_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18209
Sequence Type Exemplar sequence
Representative Public ID F53H8.1 NCBI
Target Description F53H8.1 /REP_DB=WormBase Gene ID /WP=CE04654 /TR=Q20736 /GB=AAA82343.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=clathrin coat assembly protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075783(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075783 NCBI Caenorhabditis elegans AdaPtin, Mu/medium chain (clathrin associated complex) family member (apm-3) (apm-3) mRNA, complete cds. 11/11 None
SNAP00000026703 ENSEMBL cdna:SNAP chromosome:CEL140:X:954418:957613:1 11/11 None
GENEFINDER00000026705 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:954994:957613:1 11/11 None
F53H8.1 ENSEMBL cdna:known chromosome:CEL140:X:954994:957613:1 gene:F53H8.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:954993-957613(+) 100.0 100.0
Public Domain and Genome References
Gene Title clathrin coat assembly protein
Gene Symbol apm-3
Ensembl F53H8.1
Entrez Gene 186194 Entrez gene
SwissProt Q20736 EMBL-EBI
WormBase CE35723 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1590399_AT similar to Adapter-related protein complex 3 mu 1 subunit (Mu-adaptin 3A) (AP-3 adapter complex mu3A subunit) cfa
CANINE_2:CFA.15765.1.A1_AT similar to Adapter-related protein complex 3 mu 1 subunit (Mu-adaptin 3A) (AP-3 adapter complex mu3A subunit) cfa
CANINE_2:CFAAFFX.23575.1.S1_AT similar to Adapter-related protein complex 3 mu 1 subunit (Mu-adaptin 3A) (AP-3 adapter complex mu3A subunit) cfa
CHICKEN:GGAAFFX.11440.1.S1_S_AT adaptor-related protein complex 3, mu 1 subunit gga
HU35KSUBA:RC_AA223184_AT adaptor-related protein complex 3, mu 1 subunit hs
U133_X3P:HS.298442.0.S3_3P_AT adaptor-related protein complex 3, mu 1 subunit hs
U133_X3P:HS.298442.0.S2_3P_AT adaptor-related protein complex 3, mu 1 subunit hs
HG-U133_PLUS_2:222517_AT adaptor-related protein complex 3, mu 1 subunit hs
HG-U133B:222517_AT adaptor-related protein complex 3, mu 1 subunit hs
HG-U133_PLUS_2:222516_AT adaptor-related protein complex 3, mu 1 subunit hs
HG-U133B:222516_AT adaptor-related protein complex 3, mu 1 subunit hs
HG-U95B:57145_AT adaptor-related protein complex 3, mu 1 subunit hs
MU11KSUBA:AA611758_AT adaptor-related protein complex 3, mu 1 subunit mm
MU11KSUBA:AA273560_S_AT adaptor-related protein complex 3, mu 1 subunit mm
MU11KSUBB:MSA.11077.0_S_AT adaptor-related protein complex 3, mu 1 subunit mm
MG-U74AV2:97526_AT adaptor-related protein complex 3, mu 1 subunit mm
MOE430A:1448308_AT adaptor-related protein complex 3, mu 1 subunit mm
MOUSE430A_2:1448308_AT adaptor-related protein complex 3, mu 1 subunit mm
MOUSE430_2:1448308_AT adaptor-related protein complex 3, mu 1 subunit mm
MOE430A:1416374_AT adaptor-related protein complex 3, mu 1 subunit mm
MOUSE430A_2:1416374_AT adaptor-related protein complex 3, mu 1 subunit mm
MOUSE430_2:1416374_AT adaptor-related protein complex 3, mu 1 subunit mm
MOE430A:1448309_AT adaptor-related protein complex 3, mu 1 subunit mm
MOUSE430A_2:1448309_AT adaptor-related protein complex 3, mu 1 subunit mm
MOUSE430_2:1448309_AT adaptor-related protein complex 3, mu 1 subunit mm
MOE430A:1416375_AT adaptor-related protein complex 3, mu 1 subunit mm
MOUSE430A_2:1416375_AT adaptor-related protein complex 3, mu 1 subunit mm
MOUSE430_2:1416375_AT adaptor-related protein complex 3, mu 1 subunit mm
MU19KSUBB:TC31096_S_AT Adaptor-related protein complex 3, mu 1 subunit, mRNA (cDNA clone MGC:30415 IMAGE:5026206) mm
MU19KSUBC:TC35904_AT Adaptor-related protein complex 3, mu 1 subunit, mRNA (cDNA clone MGC:30415 IMAGE:5026206) mm
MU19KSUBC:TC42091_AT Adaptor-related protein complex 3, mu 1 subunit, mRNA (cDNA clone MGC:30415 IMAGE:5026206) mm
RG-U34A:L07073_AT adaptor-related protein complex 3, mu 1 subunit rn
RAE230A:1368062_AT adaptor-related protein complex 3, mu 1 subunit rn
RAT230_2:1368062_AT adaptor-related protein complex 3, mu 1 subunit rn
RAE230B:1393562_AT adaptor-related protein complex 3, mu 1 subunit rn
RAT230_2:1393562_AT adaptor-related protein complex 3, mu 1 subunit rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6886 intracellular protein transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
30125 clathrin vesicle coat inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA82343 Adaptin, mu/medium chain (clathrin associated complex) protein 3 [Caenorhabditis elegans] ref|NP_508184.2| AdaPtin, Mu/medium chain (clathrin associated complex) family member (apm-3) [Caenorhabditis elegans] 0.0
blast CAE63593 Hypothetical protein CBG08084 [Caenorhabditis briggsae] 1.0E-170
blast XP_624899 PREDICTED: similar to GA15778-PA [Apis mellifera] 1.0E-169
Protein Domains
Database ID Description E-Value
Pfam IPR001392 EMBL-EBI Clathrin adaptor complex, medium chain 1.0E-126
Pfam IPR001392 EMBL-EBI Clathrin adaptor complex, medium chain 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:192100_AT
gcccaactttctgcgcaatattgctaatcaggtcaccggccgtacaaacctttctgaaac
cctgccaacggggcagctatcaaatattccatggaggcgacaaggagtgaagtacacaaa
taatgaagcgtattttgatgtgattgaggaaattgacgtgattgttgataagcaaggatc
cactgtttttgccgagattcagggatatgttgacgtttgctgtaaactgtccggaatgcc
tgatctcacaatgacccttatcaacccaagacttctagatgatgtatccttccatccatg
tgtcagatacaagcgctgggagaacgagaaggttctttcatttgttcctccagatggcaa
ctttcgtctgttgtcctatcatattgctgcacaaaatatggttgccattccaatctacgt
t

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCCAACTTTCTGCGCAATATTGCT 383 287 420 Antisense
TATTGCTAATCAGGTCACCGGCCGT 431 665 438 Antisense
TACAAACCTTTCTGAAACCCTGCCA 85 635 462 Antisense
GATCCACTGTTTTTGCCGAGATTCA 527 415 596 Antisense
AAACTGTCCGGAATGCCTGATCTCA 191 127 643 Antisense
GATCTCACAATGACCCTTATCAACC 579 419 661 Antisense
ATCCTTCCATCCATGTGTCAGATAC 586 39 705 Antisense
GAAGGTTCTTTCATTTGTTCCTCCA 48 335 747 Antisense
GATGGCAACTTTCGTCTGTTGTCCT 433 407 772 Antisense
CTGTTGTCCTATCATATTGCTGCAC 455 239 787 Antisense
TATGGTTGCCATTCCAATCTACGTT 336 655 816 Antisense
Sequence Source Affymetrix Proprietary Database