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[192099_s_at] IG (immunoglobulin) superfamily

Description F48C5.1 /REP_DB=WormBase Gene ID /WP=CE03360 /TR=Q20559 /GB=CAA92132.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=IG (immunoglobulin) superfamily
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 99      4grp_highest_8_8 > 52      4grp_high_8_8 > 16      6grp_highest_nonorm > 83      6grp_total > 95      4grp_total > 39      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 638
1 2 3 4 range
A 856.1
(3)
P 		349.7
(-2)
P 		244.7
(-3)
P 		448.1
(-1)
P 		611
B 767.6
(3)
P 		292.9
(-2.2)
P 		218.6
(-3)
P 		459.6
(-0.4)
P 		549
C 831.8
(3)
P 		278.9
(-2.8)
P 		261.1
(-3)
P 		483.6
(-0.7)
P 		571
avr 818.5
(3) 		307.2
(-2.3) 		241.5
(-3) 		463.8
(-0.7) 		577

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 510
1 2 3 4 5 6 range
A 423.1
(0.4)
P 		377.7
(-0.2)
P 		189.4
(-3)
P 		569.3
(2.6)
P 		597.7
(3)
P 		557.1
(2.4)
P 		408
B 416.3
(-0.6)
P 		291.3
(-2.2)
P 		232.2
(-3)
P 		397.8
(-0.9)
P 		699.7
(3)
P 		546.8
(1)
P 		468
C 450.7
(0.3)
P 		380.4
(-0.8)
P 		226.6
(-3)
P 		415.3
(-0.2)
P 		631.2
(2.9)
P 		637
(3)
P 		410
avr 430
(0) 		349.8
(-1.1) 		216.1
(-3) 		460.8
(0.4) 		642.9
(3) 		580.3
(2.1) 		427
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 261
1 2 3 4 range
A 311.7
(3)
P 		75.9
(-2.7)
P 		64
(-3)
P 		65.6
(-3)
P 		248
B 244.8
(3)
P 		72.3
(-2.3)
P 		50.7
(-3)
P 		97.9
(-1.5)
P 		194
C 275.3
(3)
P 		80.2
(-3)
P 		91
(-2.7)
P 		81.5
(-3)
P 		195
avr 277.3
(3) 		76.1
(-2.8) 		68.6
(-3) 		81.7
(-2.6) 		209

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 243
1 2 3 4 5 6 range
A 78
(-1.4)
P 		134.3
(1)
P 		41.2
(-3)
P 		144.4
(1.4)
P 		180.4
(3)
P 		135.6
(1.1)
P 		139
B 144.8
(-0.7)
P 		97
(-1.9)
P 		56.4
(-3)
P 		105.4
(-1.7)
P 		284.3
(3)
P 		203.9
(0.9)
P 		228
C 167
(1.2)
P 		116.1
(-0.7)
P 		57.7
(-3)
P 		83.5
(-2)
P 		204.2
(2.6)
P 		213.3
(3)
P 		156
avr 129.9
(-0.3) 		115.8
(-0.8) 		51.8
(-3) 		111.1
(-0.9) 		223
(3) 		184.3
(1.6) 		171
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192099_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16631
Sequence Type Exemplar sequence
Representative Public ID F48C5.1 NCBI
Target Description F48C5.1 /REP_DB=WormBase Gene ID /WP=CE03360 /TR=Q20559 /GB=CAA92132.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=IG (immunoglobulin) superfamily
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077514(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077514 NCBI Caenorhabditis elegans F48C5.1 (F48C5.1) mRNA, complete cds. 11/11 None
GENEFINDER00000013949 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11444568:11446542:-1 11/11 None
F48C5.1 ENSEMBL cdna:known chromosome:CEL140:X:11444346:11446542:-1 gene:F48C5.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000013946 8/11 Cross Hyb Matching Probes None
SNAP00000013947 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11444567-11446542(-) 100.0 100.0
Public Domain and Genome References
Gene Title IG (immunoglobulin) superfamily
Ensembl F48C5.1
Entrez Gene 181336 Entrez gene
SwissProt Q20559 EMBL-EBI
WormBase CE03360 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92132 Hypothetical protein F48C5.1 [Caenorhabditis elegans] ref|NP_509915.1| F48C5.1 [Caenorhabditis elegans] 1.0E-141
blast CAE70636 Hypothetical protein CBG17334 [Caenorhabditis briggsae] 1.0E-108
Protein Domains
Database ID Description E-Value
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 3.9E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509915.1 1 188-210
F48C5.1 1 188-210
GENEFINDER00000013949 1 188-210
Sequence
Target Sequence 
>C. ELEGANS:192099_S_AT
gttgcatcattacggtggctgcgtggaggatctccaatcaaatccgagtacgtgaaaact
aaaaaagatgcatcgttcgttgagatcaccaactatcttcctgacaaagacaatggagtg
tatgagtgctcagcgcccggaatgtctgcatcgtatagattgaaaggcgaaaagaagcac
attctcccagaaggattccgatattgctatggagaagaaatggccagctgcaaacatgct
gatcaatgccttgtggagacctcaacgggacacttcagctgtctctgcgaagttggatgg
actggagctgcttgcgatatgatatccgaaccaccggtcagagttgactctgttgttact
ccaccagtctgcgcttactggcccccagtggtgacgcttctcgtgttcatcgttattatc
gtacttttggcatattgtctctacaagttcaaagtgcgtaatccacaccactactccaag
tactcgacgacaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGCATCATTACGGTGGCTGCGTG 493 439 199 Antisense
GATGCATCGTTCGTTGAGATCACCA 676 411 265 Antisense
TGAGATCACCAACTATCTTCCTGAC 253 569 279 Antisense
GATCAATGCCTTGTGGAGACCTCAA 7 423 439 Antisense
ACCTCAACGGGACACTTCAGCTGTC 471 69 457 Antisense
GGATGGACTGGAGCTGCTTGCGATA 282 515 493 Antisense
GATATCCGAACCACCGGTCAGAGTT 239 425 519 Antisense
GAGTTGACTCTGTTGTTACTCCACC 687 397 539 Antisense
GCTTCTCGTGTTCATCGTTATTATC 312 305 594 Antisense
AAAGTGCGTAATCCACACCACTACT 57 123 649 Antisense
ACTACTCCAAGTACTCGACGACAAC 92 101 668 Antisense
Sequence Source Affymetrix Proprietary Database