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[192098_at]

Description F42G9.5 /REP_DB=WormBase Gene ID /WP=CE07233 /TR=Q20352 /GB=AAA91356.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=betaine-aldehyde dehydrogenase
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 18      4grp_highest_8_8 > 43      4grp_high_8_8 > 48      6grp_highest_nonorm > 85      6grp_total > 18      4grp_total > 55      6grp_highest_sub > De      6grp_cgc > 01      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 421
1 2 3 4 range
A 841
(3)
P 		528.4
(-3)
P 		593
(-1.8)
P 		558.1
(-2.4)
P 		313
B 932.5
(3)
P 		593.2
(-3)
P 		637.9
(-2.2)
P 		591.6
(-3)
P 		341
C 857.8
(3)
P 		517
(-2.9)
P 		723
(0.7)
P 		511.3
(-3)
P 		347
avr 877.1
(3) 		546.2
(-3) 		651.3
(-1.1) 		553.7
(-2.9) 		331

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 314
1 2 3 4 5 6 range
A 911.5
(3)
P 		796.7
(0.8)
P 		603
(-3)
P 		785.3
(0.5)
P 		736.6
(-0.4)
P 		791.3
(0.7)
P 		309
B 917.4
(3)
P 		784.5
(-0.5)
P 		690.5
(-3)
P 		800.8
(-0.1)
P 		748.7
(-1.5)
P 		791.1
(-0.3)
P 		227
C 848.5
(1.6)
P 		681.1
(-2.4)
P 		907.1
(3)
P 		658.2
(-3)
P 		801.2
(0.4)
P 		662
(-2.9)
P 		249
avr 892.5
(3) 		754.1
(-2.2) 		733.5
(-3) 		748.1
(-2.4) 		762.2
(-1.9) 		748.1
(-2.4) 		159
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 225
1 2 3 4 range
A 306.2
(3)
P 		114.7
(-2.1)
P 		155
(-1)
P 		81.7
(-3)
P 		225
B 297.4
(3)
P 		146.5
(-2.3)
P 		147.8
(-2.2)
P 		126.1
(-3)
P 		171
C 284
(3)
P 		148.6
(-1.1)
P 		252
(2)
P 		86.2
(-3)
P 		198
avr 295.9
(3) 		136.6
(-1.8) 		184.9
(-0.4) 		98
(-3) 		198

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 188
1 2 3 4 5 6 range
A 168
(-1.6)
P 		283.4
(3)
P 		131.3
(-3)
P 		199.2
(-0.3)
P 		222.3
(0.6)
P 		192.7
(-0.6)
P 		152
B 319.2
(3)
P 		261.1
(0.7)
P 		167.7
(-3)
P 		212.1
(-1.2)
P 		304.2
(2.4)
P 		295
(2)
P 		152
C 314.5
(3)
P 		207.8
(-0.5)
P 		230.9
(0.2)
P 		132.4
(-3)
P 		259.2
(1.2)
P 		221.6
(-0.1)
P 		182
avr 267.2
(3) 		250.8
(1.9) 		176.6
(-3) 		181.2
(-2.7) 		261.9
(2.6) 		236.4
(1) 		91
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192098_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8350
Sequence Type Exemplar sequence
Representative Public ID F42G9.5 NCBI
Target Description F42G9.5 /REP_DB=WormBase Gene ID /WP=CE07233 /TR=Q20352 /GB=AAA91356.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=betaine-aldehyde dehydrogenase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171072(11), NM_171073(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171072 NCBI Caenorhabditis elegans ALdehyde deHydrogenase family member (alh-11) (alh-11) mRNA, complete cds. 11/11 None
NM_171073 NCBI Caenorhabditis elegans ALdehyde deHydrogenase family member (alh-11) (alh-11) mRNA, complete cds. 11/11 None
SNAP00000038496 ENSEMBL cdna:SNAP chromosome:CEL140:III:774388:776994:-1 11/11 None
GENEFINDER00000038503 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:774388:778129:-1 11/11 None
F42G9.5a ENSEMBL cdna:known chromosome:CEL140:III:774323:778149:-1 gene:F42G9.5 11/11 None
F42G9.5b.1 ENSEMBL cdna:known chromosome:CEL140:III:774388:777000:-1 gene:F42G9.5 11/11 None
F42G9.5b.2 ENSEMBL cdna:known chromosome:CEL140:III:774388:778866:-1 gene:F42G9.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:774387-778129(-) 100.0 100.0
Public Domain and Genome References
Ensembl F42G9.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA91356 Aldehyde dehydrogenase protein 11, isoform a [Caenorhabditis elegans] ref|NP_741082.1| ALdehyde deHydrogenase family member (alh-11) [Caenorhabditis elegans] 0.0
blast CAE69175 Hypothetical protein CBG15207 [Caenorhabditis briggsae] 0.0
blast AAM29693 Aldehyde dehydrogenase protein 11, isoform b [Caenorhabditis elegans] ref|NP_741083.1| ALdehyde deHydrogenase family member (alh-11) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002086 EMBL-EBI Aldehyde dehydrogenase 1.0E-126
Pfam IPR002086 EMBL-EBI Aldehyde dehydrogenase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:192098_AT
gttggatcccatatttctgcagagcatcgtaacaaagtcgaagggtatataagtactgcc
attgccgaaggagccaccaagctttgtggtggagatcgtgtggccgttcatggcctcgag
aatggattctacttgtctccatgtattttaacaggcattacacccaaaatgacagtatat
cgggaggaaatctttggatccgtacttctaatcattccatttgataccgaagatgaagct
attaaaattgcaaatgacaccgatatgggattagctgcgggtctagtcacgaaagacctc
tcaagatcctatcgagtatctgagcagttgaatgctggaaacgtctatgtcaatacctat
aatgatgtttcgccactggttccattcggaggagtcggagaatcaggattcggacgtgaa
aacggaacagcagtactcgaacattatactcacctgaagtcggtctttgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGGATCCCATATTTCTGCAGAGC 236 437 1576 Antisense
GTACTGCCATTGCCGAAGGAGCCAC 513 459 1628 Antisense
TTGTGGTGGAGATCGTGTGGCCGTT 671 707 1659 Antisense
GCCGTTCATGGCCTCGAGAATGGAT 652 283 1678 Antisense
GGATTCTACTTGTCTCCATGTATTT 409 509 1699 Antisense
TTGGATCCGTACTTCTAATCATTCC 110 705 1769 Antisense
TGGGATTAGCTGCGGGTCTAGTCAC 38 353 1841 Antisense
GAAAGACCTCTCAAGATCCTATCGA 81 361 1866 Antisense
TAATGATGTTTCGCCACTGGTTCCA 403 633 1935 Antisense
GTACTCGAACATTATACTCACCTGA 206 459 2008 Antisense
TACTCACCTGAAGTCGGTCTTTGTC 634 643 2022 Antisense
Sequence Source Affymetrix Proprietary Database