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[192096_at]

Description R11.1 /REP_DB=WormBase Gene ID /WP=CE28347 /TR=O62347 /GB=CAB04651.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=mitochondrial transporter protein
Cluster 6grp_highest_10_10 > 36      6grp_high1_10_10 > 40      6grp_highest_nonorm > 80      6grp_total > 52      4grp_total > 41      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 158
1 2 3 4 range
A 169
(-1.9)
P 		222.7
(0.7)
P 		269
(3)
P 		146.9
(-3)
A 		122
B 111
(-3)
P 		166.9
(-0.5)
P 		136.7
(-1.8)
P 		243
(3)
M 		132
C 146.1
(-0.1)
P 		173.5
(3)
P 		135
(-1.4)
P 		120.9
(-3)
A 		53
avr 142
(-3) 		187.7
(3) 		180.2
(2) 		170.3
(0.7) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 393
1 2 3 4 5 6 range
A 205
(-1.2)
P 		224.5
(-0.2)
P 		282.3
(3)
P 		220.2
(-0.4)
P 		173.1
(-3)
P 		186.2
(-2.3)
P 		109
B 235.6
(-1.7)
P 		239.7
(-1.6)
P 		497.2
(3)
P 		246.2
(-1.5)
P 		185.7
(-2.6)
P 		163.1
(-3)
P 		334
C 134.6
(-2.2)
P 		196.7
(-0.4)
P 		192.1
(-0.6)
P 		321.7
(3)
P 		103.8
(-3)
P 		216.4
(0.1)
P 		218
avr 191.7
(-1.7) 		220.3
(-0.7) 		323.9
(3) 		262.7
(0.8) 		154.2
(-3) 		188.6
(-1.8) 		170
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 61.5
(1.9)
P 		48.3
(0.3)
P 		70.3
(3)
P 		21.5
(-3)
A 		49
B 35.4
(-1.9)
P 		41.2
(-0.2)
P 		31.7
(-3)
P 		51.8
(3)
M 		20
C 48.4
(2.7)
P 		49.9
(3)
P 		47
(2.4)
P 		20.4
(-3)
A 		30
avr 48.4
(2.6) 		46.5
(2) 		49.7
(3) 		31.2
(-3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 37.8
(-3)
P 		79.9
(3)
P 		61.5
(0.4)
P 		55.8
(-0.4)
P 		52.2
(-0.9)
P 		45.3
(-1.9)
P 		42
B 82
(-0.9)
P 		79.8
(-1.1)
P 		120.7
(3)
P 		65.2
(-2.6)
P 		75.4
(-1.5)
P 		60.8
(-3)
P 		60
C 49.9
(-0.5)
P 		60
(1.1)
P 		48.9
(-0.6)
P 		64.7
(1.8)
P 		33.6
(-3)
P 		72.4
(3)
P 		39
avr 56.6
(-2.3) 		73.2
(2) 		77
(3) 		61.9
(-0.9) 		53.7
(-3) 		59.5
(-1.5) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192096_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17335
Sequence Type Exemplar sequence
Representative Public ID R11.1 NCBI
Target Description R11.1 /REP_DB=WormBase Gene ID /WP=CE28347 /TR=O62347 /GB=CAB04651.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=mitochondrial transporter protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078237
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000019698 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16189784:16194818:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_078237 5/11 Cross Hyb Matching Probes A 
SNAP00000019695 5/11 Cross Hyb Matching Probes None
R11.1 5/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16189783-16194818(+) 86.93 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04651 Hypothetical protein R11.1 [Caenorhabditis elegans] ref|NP_510638.2| R11.1 [Caenorhabditis elegans] 1.0E-106
blast CAE69989 Hypothetical protein CBG16392 [Caenorhabditis briggsae] 1.0E-102
blast XP_783093 PREDICTED: similar to solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21 [Strongylocentrotus purpuratus] 2.0E-56
Protein Domains
Database ID Description E-Value
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 1.3E-33
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 6.1E-25
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 1.7E-27
Sequence
Target Sequence 
>C. ELEGANS:192096_AT
atggtctatttcgggttgtatcatagttgcagagaagttattcctgatgccaaggtaggg
tatgaatcacgggtgggcggcaaaacggcaattgccgttcggcaaattgaatttgatttc
cggcaatttgccggtttgccgatttgccggaaatttttattttcggcaaattgccaattt
gccatttgccgaaaatgttcagagggattttttataagacggaaactaaaaccaaaaaaa
acacaagaaatttctttcaaacttctgattgcttccggttattttccccccaaaggtttt
tttcttcagcaaaatccaacatcaaacttaattggaagaatcgccttaggattcaccgcc
ggatcgcttgcttcaatcttcaacattccatttgacgtagcaaagagccggatccaaggc
ccacagccggacccattcactaggaaatacagtggaacaatgcaaacgatttctttggtt
tacaaggaggaaggattcggtgctctgtacaaaggacttcttcccaaagtgatgagacta
ggacctggtggagctgttatgctgattgtctacgacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGTCTATTTCGGGTTGTATCATA 344 51 529 Antisense
GAGAAGTTATTCCTGATGCCAAGGT 260 391 560 Antisense
GGTAGGGTATGAATCACGGGTGGGC 53 503 582 Antisense
CACGGGTGGGCGGCAAAACGGCAAT 514 197 596 Antisense
TGAATTTGATTTCCGGCAATTTGCC 315 575 636 Antisense
AATTTCTTTCAAACTTCTGATTGCT 420 175 777 Antisense
TCTGATTGCTTCCGGTTATTTTCCC 209 607 792 Antisense
AAGAATCGCCTTAGGATTCACCGCC 66 153 864 Antisense
AAAGGACTTCTTCCCAAAGTGATGA 405 121 1039 Antisense
CTAGGACCTGGTGGAGCTGTTATGC 368 225 1066 Antisense
GCTGTTATGCTGATTGTCTACGACG 456 295 1081 Antisense
Sequence Source Affymetrix Proprietary Database