[Home] | [Total List]

[192095_at] Cysteine proteases (2 domains)

Description Y51A2D.1 /REP_DB=WormBase Gene ID /WP=CE18411 /TR=O62484 /GB=CAA16404.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Cysteine proteases (2 domains)
Cluster 6grp_total > 80      4grp_total > 40      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 10.4
(-1)
A 		8.5
(-1.9)
A 		18.7
(3)
A 		6.1
(-3)
A 		13
B 3.2
(-3)
A 		22.5
(1.7)
A 		28
(3)
A 		22.9
(1.8)
A 		25
C 9.3
(-3)
A 		16.7
(3)
A 		12.7
(-0.2)
A 		11.9
(-0.9)
A 		7
avr 7.6
(-3) 		15.9
(1.1) 		19.8
(3) 		13.6
(-0) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 8.7
(0.2)
A 		6.2
(-1.4)
A 		13.2
(3)
A 		7.8
(-0.4)
A 		4.5
(-2.5)
A 		3.7
(-3)
A 		10
B 7.9
(-2.3)
A 		11.2
(-1.8)
A 		3.6
(-3)
A 		43.1
(3)
A 		4.5
(-2.9)
A 		8.5
(-2.3)
A 		40
C 19.1
(3)
A 		7.7
(-2.3)
A 		6.3
(-3)
A 		6.8
(-2.8)
A 		9.2
(-1.6)
A 		8
(-2.2)
A 		13
avr 11.9
(-0.3) 		8.4
(-1.9) 		7.7
(-2.3) 		19.2
(3) 		6.1
(-3) 		6.7
(-2.7) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 3.8
(1.4)
A 		1.9
(-1.5)
A 		4.9
(3)
A 		0.9
(-3)
A 		4
B 1
(-3)
A 		5.6
(2)
A 		6.5
(3)
A 		4.9
(1.3)
A 		6
C 3.1
(-0.6)
A 		4.8
(3)
A 		4.4
(2.1)
A 		2
(-3)
A 		3
avr 2.6
(-3) 		4.1
(0.3) 		5.3
(3) 		2.6
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 1.6
(-0.9)
A 		2.2
(0.9)
A 		2.9
(3)
A 		2
(0.3)
A 		1.4
(-1.5)
A 		0.9
(-3)
A 		2
B 2.7
(-2)
A 		3.7
(-1.4)
A 		0.9
(-3)
A 		11.4
(3)
A 		1.8
(-2.5)
A 		3.2
(-1.7)
A 		11
C 7.1
(3)
A 		2.3
(-2.1)
A 		1.6
(-2.8)
A 		1.4
(-3)
A 		3
(-1.3)
A 		2.7
(-1.6)
A 		6
avr 3.8
(0.9) 		2.7
(-1.3) 		1.8
(-3) 		4.9
(3) 		2.1
(-2.4) 		2.3
(-2) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192095_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14388
Sequence Type Exemplar sequence
Representative Public ID Y51A2D.1 NCBI
Target Description Y51A2D.1 /REP_DB=WormBase Gene ID /WP=CE18411 /TR=O62484 /GB=CAA16404.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Cysteine proteases (2 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075221(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075221 NCBI Caenorhabditis elegans Y51A2D.1 (Y51A2D.1) mRNA, complete cds. 11/11 None
Y51A2D.1 ENSEMBL cdna:known chromosome:CEL140:V:18511447:18515206:1 gene:Y51A2D.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000034273 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18511446-18515173(+) 100.0 100.0
Public Domain and Genome References
Gene Title Cysteine proteases (2 domains)
Ensembl Y51A2D.1
Entrez Gene 180204 Entrez gene
SwissProt O62484 EMBL-EBI
WormBase CE18411 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8234 cysteine-type peptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA16404 Hypothetical protein Y51A2D.1 [Caenorhabditis elegans] ref|NP_507622.1| Y51A2D.1 [Caenorhabditis elegans] 0.0
blast CAA16407 Hypothetical protein Y51A2D.8 [Caenorhabditis elegans] ref|NP_507627.1| Y51A2D.8 [Caenorhabditis elegans] 9.0E-89
blast CAE67432 Hypothetical protein CBG12922 [Caenorhabditis briggsae] 1.0E-88
Sequence
Target Sequence 
>C. ELEGANS:192095_AT
gtttaagctaatgtcccatatccccgcactggcaccaaatttttcggattttgatttttt
tttttttgaatttttggctaaactaaacatgtttctgagtttttccgatcaagaaatgtg
cgactgtgccactgatgggacaaaagcgggctgcgctggtgggggacttatgtggggtgt
cgagtacgccatcaacaatggtctagcgtcggaattcgattatcctgagtttgaccagaa
tcgggccaccaggcctggaacgtgtgaagccatggatgatgataagacttttccgccggt
taattttgccgccggaaccgcatttttgcagtacaaatccggtgttctagtcacagaaga
ttgtgatttagctggcaccgtttggcacgccggagccatagtcggctacggagaggaaaa
cgatctacgcgggcggagcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTAAGCTAATGTCCCATATCCCC 644 449 579 Antisense
CCCGCACTGGCACCAAATTTTTCGG 198 261 601 Antisense
AATGTGCGACTGTGCCACTGATGGG 700 163 693 Antisense
CAAAAGCGGGCTGCGCTGGTGGGGG 645 189 719 Antisense
TATGTGGGGTGTCGAGTACGCCATC 516 655 747 Antisense
GAGTTTGACCAGAATCGGGCCACCA 404 399 805 Antisense
CCACCAGGCCTGGAACGTGTGAAGC 346 271 824 Antisense
TAATTTTGCCGCCGGAACCGCATTT 555 627 879 Antisense
TGATTTAGCTGGCACCGTTTGGCAC 560 563 942 Antisense
CACGCCGGAGCCATAGTCGGCTACG 311 199 964 Antisense
GAAAACGATCTACGCGGGCGGAGCC 644 351 994 Antisense
Sequence Source Affymetrix Proprietary Database