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[192094_at] SCP-like extracellular Proteins

Description ZK384.1 /REP_DB=WormBase Gene ID /WP=CE16722 /TR=O62507 /GB=CAB05010.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=SCP-like extracellular Proteins
Cluster 6grp_total > 64      4grp_total > 28      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 70.8
(0.4)
P 		77.4
(0.9)
P 		26.5
(-3)
A 		105.1
(3)
A 		79
B 58.4
(1.6)
P 		64.2
(3)
M 		39.6
(-3)
A 		55
(0.8)
A 		25
C 61.5
(-1.1)
M 		66.9
(-0.7)
P 		27
(-3)
P 		133.3
(3)
A 		106
avr 63.6
(-0.1) 		69.5
(0.5) 		31
(-3) 		97.8
(3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 2.6
(-3)
A 		3.2
(-2.9)
A 		22.2
(-0.1)
A 		24.2
(0.2)
A 		42.7
(3)
A 		37
(2.1)
A 		40
B 44.9
(-0.4)
P 		27.5
(-1.9)
A 		83.6
(3)
M 		62.7
(1.2)
M 		25.3
(-2.1)
A 		14.5
(-3)
A 		69
C 36.2
(1.9)
P 		34.2
(1.6)
A 		28.6
(0.8)
A 		29.7
(0.9)
A 		3.3
(-3)
A 		43.6
(3)
A 		40
avr 27.9
(-1.4) 		21.6
(-3) 		44.8
(3) 		38.9
(1.5) 		23.8
(-2.4) 		31.7
(-0.4) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 25.8
(3)
P 		16.8
(0.1)
P 		6.9
(-3)
A 		15.4
(-0.3)
A 		19
B 18.6
(3)
P 		15.9
(1.3)
M 		9.2
(-3)
A 		11.7
(-1.4)
A 		9
C 20.3
(2)
M 		19.2
(1.5)
P 		9.4
(-3)
P 		22.5
(3)
A 		13
avr 21.6
(3) 		17.3
(1) 		8.5
(-3) 		16.5
(0.7) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 0.5
(-3)
A 		1.1
(-2.7)
A 		4.8
(-0.9)
A 		6.1
(-0.3)
A 		12.9
(3)
A 		9
(1.1)
A 		12
B 15.6
(1.1)
P 		9.1
(-1.5)
A 		20.3
(3)
M 		16.6
(1.5)
M 		10.3
(-1)
A 		5.4
(-3)
A 		15
C 13.4
(2.5)
P 		10.4
(1.1)
A 		7.3
(-0.2)
A 		6
(-0.8)
A 		1.1
(-3)
A 		14.6
(3)
A 		14
avr 9.8
(1.5) 		6.9
(-3) 		10.8
(3) 		9.6
(1.2) 		8.1
(-1.2) 		9.7
(1.3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192094_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14532
Sequence Type Exemplar sequence
Representative Public ID ZK384.1 NCBI
Target Description ZK384.1 /REP_DB=WormBase Gene ID /WP=CE16722 /TR=O62507 /GB=CAB05010.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=SCP-like extracellular Proteins
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075253(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075253 NCBI Caenorhabditis elegans ZK384.1 (ZK384.1) mRNA, complete cds. 11/11 None
SNAP00000029485 ENSEMBL cdna:SNAP chromosome:CEL140:V:18734581:18735346:1 11/11 None
GENEFINDER00000029488 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18734581:18735346:1 11/11 None
ZK384.1 ENSEMBL cdna:known chromosome:CEL140:V:18734581:18735346:1 gene:ZK384.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18734580-18735346(+) 100.0 100.0
Public Domain and Genome References
Gene Title SCP-like extracellular Proteins
Ensembl ZK384.1
Entrez Gene 191308 Entrez gene
SwissProt O62507 EMBL-EBI
WormBase CE16722 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05010 Hypothetical protein ZK384.1 [Caenorhabditis elegans] ref|NP_507654.1| ZK384.1 [Caenorhabditis elegans] 1.0E-107
blast CAB05010 Hypothetical protein ZK384.1 [Caenorhabditis elegans] ref|NP_507654.1| ZK384.1 [Caenorhabditis elegans] 1.0E-104
blast CAB05011 Hypothetical protein ZK384.2 [Caenorhabditis elegans] ref|NP_507655.1| ZK384.2 [Caenorhabditis elegans] 4.0E-32
blast CAE56328 Hypothetical protein CBG23993 [Caenorhabditis briggsae] 8.0E-32
blast CAE58102 Hypothetical protein CBG01188 [Caenorhabditis briggsae] 6.0E-30
Protein Domains
Database ID Description E-Value
Pfam IPR001283 EMBL-EBI Allergen V5/Tpx-1 related 9.7E-38
Pfam IPR001283 EMBL-EBI Allergen V5/Tpx-1 related 6.3E-38
Sequence
Target Sequence 
>C. ELEGANS:192094_AT
ggccagctcagtcctaatggccggcaacaagttttagacttccacaacaaactacgatcc
caagttgcattgggtgtattctcagctaacggaacgattaagccgccagcaaggaatatg
gaacggcttacttacggacaacagttcgaaagactggctcaggactatgtagcggattgt
ccagatggattggaaatcccaatcgggagaaacatcgggatgaactactacacaactaag
gtcatagatgctttaaacgattgggccgaggagttccaggtgaacgggtggctcagcact
atctacaacgacaccagcatctccgcagccagtcagatggtatgggccgggaccaaatac
gtgggctgtggtgtgaaacgctgtgaccccattaatgtagtcgtggtttgcatgtactat
cagcaaggaaatctagtcggacgcccgatctacaaggagggtccgccgtgcactgcgtgt
ccaccgatgaggattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCCAGCTCAGTCCTAATGGCCGGC 534 535 58 Antisense
GACTTCCACAACAAACTACGATCCC 469 371 94 Antisense
GTTGCATTGGGTGTATTCTCAGCTA 387 439 121 Antisense
AGGTGAACGGGTGGCTCAGCACTAT 124 59 335 Antisense
TCAGCACTATCTACAACGACACCAG 344 625 350 Antisense
ATCTCCGCAGCCAGTCAGATGGTAT 109 33 376 Antisense
GGGCCGGGACCAAATACGTGGGCTG 5 319 401 Antisense
GGGCTGTGGTGTGAAACGCTGTGAC 97 493 420 Antisense
AACGCTGTGACCCCATTAATGTAGT 34 147 434 Antisense
TCTAGTCGGACGCCCGATCTACAAG 635 599 489 Antisense
ACTGCGTGTCCACCGATGAGGATTT 645 97 529 Antisense
Sequence Source Affymetrix Proprietary Database