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[192093_s_at] UDP-glucuronosyltransferase

Description C07A9.6A /REP_DB=WormBase Gene ID /WP=CE00494 /TR=SW:P34317 /GB=CAA82344.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=UDP-glucuronosyltransferase
Cluster 6grp_highest_10_10 > 14      6grp_high1_10_10 > 21      4grp_high_8_8 > 60      6grp_highest_nonorm > 61      6grp_total > 41      4grp_total > 60      6grp_cgc > 71      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 396
1 2 3 4 range
A 407.1
(1.8)
P 		444.5
(2.5)
P 		473.1
(3)
P 		140.5
(-3)
P 		333
B 420.9
(2)
P 		482.2
(3)
P 		442.9
(2.4)
P 		100.1
(-3)
P 		382
C 438
(2.3)
P 		410
(1.8)
P 		486.2
(3)
P 		89.8
(-3)
A 		396
avr 422
(2.2) 		445.6
(2.6) 		467.4
(3) 		110.1
(-3) 		357

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 542
1 2 3 4 5 6 range
A 401.3
(0.9)
P 		435.7
(1.4)
P 		545.5
(3)
P 		358.8
(0.3)
P 		196.7
(-2.1)
P 		131.5
(-3)
P 		414
B 449.7
(0.7)
P 		477.1
(1)
P 		654.9
(3)
P 		376.4
(-0.1)
P 		228.1
(-1.7)
P 		113.1
(-3)
P 		542
C 409.4
(0.5)
P 		382
(0.1)
P 		594.4
(3)
P 		427.3
(0.7)
P 		198.4
(-2.4)
P 		155.3
(-3)
P 		439
avr 420.1
(0.7) 		431.6
(0.8) 		598.3
(3) 		387.5
(0.3) 		207.7
(-2) 		133.3
(-3) 		465
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 154
1 2 3 4 range
A 148.2
(3)
P 		96.5
(0.6)
P 		123.7
(1.8)
P 		20.6
(-3)
P 		128
B 134.2
(3)
P 		119.1
(2.2)
P 		102.6
(1.3)
P 		21.3
(-3)
P 		113
C 145
(2)
P 		117.9
(1)
P 		169.5
(3)
P 		15.1
(-3)
A 		154
avr 142.5
(3) 		111.2
(1.5) 		131.9
(2.5) 		19
(-3) 		124

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 127
1 2 3 4 5 6 range
A 74
(-0.9)
P 		154.9
(3)
P 		118.8
(1.2)
P 		91
(-0.1)
P 		59.4
(-1.7)
P 		32
(-3)
P 		123
B 156.5
(2.9)
P 		158.8
(3)
P 		159
(3)
P 		99.7
(-0)
P 		92.7
(-0.4)
P 		42.2
(-3)
P 		117
C 151.7
(3)
P 		116.5
(0.9)
P 		151.3
(3)
P 		85.9
(-1)
P 		64.2
(-2.3)
P 		52
(-3)
P 		100
avr 127.4
(2.1) 		143.4
(3) 		143
(3) 		92.2
(-0) 		72.1
(-1.2) 		42.1
(-3) 		101
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192093_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6034
Sequence Type Exemplar sequence
Representative Public ID C07A9.6A NCBI
Target Description C07A9.6A /REP_DB=WormBase Gene ID /WP=CE00494 /TR=SW:P34317 /GB=CAA82344.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=UDP-glucuronosyltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001025987(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001025987 NCBI Caenorhabditis elegans C07A9.6 (UDP-glucuronosyltransferase) mRNA, complete cds. 11/11 None
GENEFINDER00000039340 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9670798:9683204:-1 11/11 None
SNAP00000039322 ENSEMBL cdna:SNAP chromosome:CEL140:III:9676364:9678626:-1 11/11 None
C07A9.6.1 ENSEMBL cdna:known chromosome:CEL140:III:9676091:9678936:-1 gene:C07A9.6 11/11 None
C07A9.6.2 ENSEMBL cdna:known chromosome:CEL140:III:9676320:9678927:-1 gene:C07A9.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9676359-9681161(-) 99.01 100.0
Public Domain and Genome References
Gene Title UDP-glucuronosyltransferase
Gene Symbol ugt-60
Ensembl C07A9.6
Entrez Gene 176366 Entrez gene
SwissProt P34317 EMBL-EBI
WormBase CE33970 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16758 transferase activity, transferring hexosyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA82344 Hypothetical protein C07A9.6 [Caenorhabditis elegans] ref|NP_001021158.1| C07A9.6 [Caenorhabditis elegans] sp|P34317|YKT6_CAEEL Hypothetical protein C07A9.6 in chromosome III precursor 0.0
blast CAE65154 Hypothetical protein CBG10022 [Caenorhabditis briggsae] 0.0
blast CAE65154 Hypothetical protein CBG10022 [Caenorhabditis briggsae] 1.0E-160
blast CAE65154 Hypothetical protein CBG10022 [Caenorhabditis briggsae] 1.0E-159
Protein Domains
Database ID Description E-Value
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.0012
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 6.2E-31
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 4.2E-32
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 4.2E-32
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000039340 1 13-35
Sequence
Target Sequence 
>C. ELEGANS:192093_S_AT
ctctttcctcggcgcattcggaaaattgaagacttacacaattctttggaggatggaaaa
atctgtggcgggagctgaaaagtatgagaatctgcatttggtgaagtggttaccgcagaa
ggatattatgagacacccaaaaatgaaattaatgattgcacatggaggctataattcttt
cttggaagctgcacaggctggaatccctgctgttctgatgccactatttgcggatcagaa
gatcaatgcaaagagagcccagagatatggaatggcaactgtactggataaattagattt
gactatcaataatgtttatggagccatcaaggaagcattgaaaccggagtactccacaaa
tgcaaaaaaactatccgcgatgctctcagatcaagttgctcgaaaaccttattctgcact
ccgatactctctgaaattagcaacaagtccgaaaccttctctgttcacactgaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCTTTCCTCGGCGCATTCGGAAAA 185 229 1566 Antisense
GCACATGGAGGCTATAATTCTTTCT 253 317 1723 Antisense
ATTCTTTCTTGGAAGCTGCACAGGC 261 7 1739 Antisense
TGCACAGGCTGGAATCCCTGCTGTT 315 577 1755 Antisense
GCTGTTCTGATGCCACTATTTGCGG 465 295 1774 Antisense
AAAAAAACTATCCGCGATGCTCTCA 466 129 1929 Antisense
GCTCTCAGATCAAGTTGCTCGAAAA 703 299 1947 Antisense
GCTCGAAAACCTTATTCTGCACTCC 320 299 1963 Antisense
TGCACTCCGATACTCTCTGAAATTA 653 577 1980 Antisense
GCAACAAGTCCGAAACCTTCTCTGT 191 319 2005 Antisense
AAACCTTCTCTGTTCACACTGAAAT 696 123 2017 Antisense
Sequence Source Affymetrix Proprietary Database