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[192092_at] bromodomain-containing protein

Description F13C5.2 /REP_DB=WormBase Gene ID /WP=CE19384 /TR=O76561 /GB=AAC64610.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=bromodomain-containing protein
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 26      4grp_highest_8_8 > 48      4grp_high_8_8 > 42      6grp_highest_nonorm > 30      6grp_total > 25      4grp_total > 45      6grp_highest_sub > Cu      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1078
1 2 3 4 range
A 1355.3
(3)
P 		1006.4
(0.5)
P 		696.2
(-1.7)
P 		505.3
(-3)
P 		850
B 1462.6
(3)
P 		907.9
(-0.3)
P 		709
(-1.5)
P 		465.8
(-3)
P 		997
C 1400.4
(3)
P 		1035.7
(0.8)
P 		680.2
(-1.3)
P 		384.8
(-3)
P 		1016
avr 1406.1
(3) 		983.3
(0.3) 		695.1
(-1.5) 		452
(-3) 		954

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1153
1 2 3 4 5 6 range
A 1518.3
(3)
P 		1191.3
(1.3)
P 		687.7
(-1.4)
P 		541.8
(-2.2)
P 		397
(-3)
P 		709.1
(-1.3)
P 		1121
B 1093.2
(3)
P 		1086.8
(2.9)
P 		789.2
(0.1)
P 		745.4
(-0.3)
P 		463.4
(-3)
P 		625.7
(-1.5)
P 		630
C 1185.5
(3)
P 		969
(1.4)
P 		813.3
(0.3)
P 		507
(-2)
P 		365.2
(-3)
P 		690.3
(-0.6)
P 		820
avr 1265.7
(3) 		1082.4
(1.7) 		763.4
(-0.5) 		598.1
(-1.7) 		408.5
(-3) 		675
(-1.1) 		857
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 429
1 2 3 4 range
A 493.5
(3)
P 		218.5
(-0.9)
P 		182
(-1.5)
P 		74
(-3)
P 		420
B 466.4
(3)
P 		224.2
(-1)
P 		164.3
(-1.9)
P 		99.3
(-3)
P 		367
C 463.6
(3)
P 		297.8
(0.5)
P 		237.1
(-0.4)
P 		64.9
(-3)
P 		399
avr 474.5
(3) 		246.8
(-0.5) 		194.5
(-1.3) 		79.4
(-3) 		395

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 338
1 2 3 4 5 6 range
A 279.9
(0.2)
P 		423.7
(3)
P 		149.8
(-2.4)
P 		137.4
(-2.7)
P 		119.8
(-3)
P 		172.6
(-2)
P 		304
B 380.4
(3)
P 		361.7
(2.4)
P 		191.6
(-2.9)
P 		197.4
(-2.7)
P 		188.3
(-3)
P 		233.3
(-1.6)
P 		192
C 439.4
(3)
P 		295.7
(0.4)
P 		207
(-1.1)
P 		101.9
(-3)
P 		118.2
(-2.7)
P 		231.1
(-0.7)
P 		338
avr 366.6
(3) 		360.4
(2.8) 		182.8
(-1.9) 		145.6
(-2.9) 		142.1
(-3) 		212.3
(-1.1) 		225
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192092_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18592
Sequence Type Exemplar sequence
Representative Public ID F13C5.2 NCBI
Target Description F13C5.2 /REP_DB=WormBase Gene ID /WP=CE19384 /TR=O76561 /GB=AAC64610.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=bromodomain-containing protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075723(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075723 NCBI Caenorhabditis elegans F13C5.2 (F13C5.2) mRNA, complete cds. 11/11 None
SNAP00000042500 ENSEMBL cdna:SNAP chromosome:CEL140:X:593980:595787:1 11/11 None
GENEFINDER00000042506 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:593980:595787:1 11/11 None
F13C5.2 ENSEMBL cdna:known chromosome:CEL140:X:593960:596289:1 gene:F13C5.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:593979-595787(+) 100.0 100.0
Public Domain and Genome References
Gene Title bromodomain-containing protein
Ensembl F13C5.2
Entrez Gene 180410 Entrez gene
SwissProt O76561 EMBL-EBI
WormBase CE19384 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC64610 Hypothetical protein F13C5.2 [Caenorhabditis elegans] ref|NP_508124.1| F13C5.2 [Caenorhabditis elegans] 1.0E-77
blast CAE63646 Hypothetical protein CBG08144 [Caenorhabditis briggsae] 3.0E-45
blast CAE68907 Hypothetical protein CBG14881 [Caenorhabditis briggsae] 5.0E-23
Protein Domains
Database ID Description E-Value
Pfam IPR001487 EMBL-EBI Bromodomain 4.7E-34
Sequence
Target Sequence 
>C. ELEGANS:192092_AT
cggcgaggagtacgacactgcagttgagttcaaggaagacttcaaattaatgatcaacaa
ttgtctcacttacaacaatgaaggggatccagtagctgattttgctcttcaattccgcaa
aaaatttgctgccaaatggaagaaggaattcccagaggacggagacagttttggacagga
gaaaggtgaaaaagaaggaagtgacaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnncaatgcagaagagaaacctgctgaagaacctgagca
gccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
ttccagtgatgaagaggatggtcttgacgatgatgacgtcaggcgtcacataccagcatc
aacatcagctccagtcgccaagcatccagaagccgcgatgccagagccagctgccgagca
ttcctcaattcagtcatccgaagctcaagctctgggagaaatttcaggagcacacccgat
acacatcggcgagtcggagattgccggacatgccgc

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGGCGAGGAGTACGACACTGCAGTT 54 243 531 Antisense
ATGATCAACAATTGTCTCACTTACA 183 47 580 Antisense
GGGGATCCAGTAGCTGATTTTGCTC 28 499 613 Antisense
GCTGATTTTGCTCTTCAATTCCGCA 450 295 625 Antisense
TGACGTCAGGCGTCACATACCAGCA 333 569 924 Antisense
TCGCCAAGCATCCAGAAGCCGCGAT 159 597 965 Antisense
TGCCGAGCATTCCTCAATTCAGTCA 595 585 1002 Antisense
TTCAGTCATCCGAAGCTCAAGCTCT 204 687 1019 Antisense
ATTTCAGGAGCACACCCGATACACA 602 15 1051 Antisense
CGATACACATCGGCGAGTCGGAGAT 298 249 1067 Antisense
AGTCGGAGATTGCCGGACATGCCGC 297 61 1082 Antisense
Sequence Source Affymetrix Proprietary Database