[Home] | [Total List]

[192091_at] seven trans-membrane receptor

Description F57H12.4 /REP_DB=WormBase Gene ID /WP=CE17125 /TR=O45096 /GB=AAC02600.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=seven trans-membrane receptor
Cluster 6grp_total > 81      4grp_total > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 209
1 2 3 4 range
A 43.9
(-0.9)
A 		6.7
(-2.9)
A 		5
(-3)
A 		115.3
(3)
P 		110
B 48.1
(-1.5)
A 		32.4
(-2.2)
A 		11.8
(-3)
A 		161.5
(3)
P 		150
C 69
(-1.9)
P 		36.3
(-3)
A 		39.4
(-2.9)
A 		214
(3)
P 		178
avr 53.7
(-1.6) 		25.1
(-2.7) 		18.7
(-3) 		163.6
(3) 		145

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 111
1 2 3 4 5 6 range
A 57.4
(1.1)
A 		18.3
(-1.9)
A 		54.5
(0.9)
P 		82.3
(3)
P 		81.8
(3)
P 		3.3
(-3)
A 		79
B 50
(-1.5)
A 		43.5
(-2.2)
A 		35.9
(-3)
A 		90.5
(3)
P 		82.2
(2.1)
M 		49.2
(-1.5)
A 		55
C 25.5
(-2)
A 		7.8
(-3)
A 		38.6
(-1.3)
A 		114
(3)
A 		58.5
(-0.1)
A 		27.9
(-1.9)
A 		106
avr 44.3
(-1.3) 		23.2
(-3) 		43
(-1.4) 		95.6
(3) 		74.2
(1.2) 		26.8
(-2.7) 		72
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 16
(2.7)
A 		1.5
(-2.9)
A 		1.3
(-3)
A 		16.9
(3)
P 		16
B 15.3
(-0.6)
A 		8
(-2)
A 		2.7
(-3)
A 		34.4
(3)
P 		32
C 22.9
(-0.1)
P 		10.4
(-3)
A 		13.7
(-2.2)
A 		36.1
(3)
P 		26
avr 18.1
(0.2) 		6.6
(-2.8) 		5.9
(-3) 		29.1
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 10.6
(-0.5)
A 		6.5
(-1.6)
A 		11.9
(-0.2)
P 		20.9
(2)
P 		24.7
(3)
P 		0.8
(-3)
A 		24
B 17.4
(-0.9)
A 		14.5
(-1.6)
A 		8.7
(-3)
A 		24
(0.7)
P 		33.4
(3)
M 		18.4
(-0.6)
A 		25
C 9.5
(-0.9)
A 		2.4
(-3)
A 		9.8
(-0.8)
A 		22.9
(3)
A 		18.9
(1.8)
A 		9.4
(-1)
A 		21
avr 12.5
(-1.4) 		7.8
(-3) 		10.1
(-2.2) 		22.6
(2) 		25.7
(3) 		9.5
(-2.4) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192091_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9020
Sequence Type Exemplar sequence
Representative Public ID F57H12.4 NCBI
Target Description F57H12.4 /REP_DB=WormBase Gene ID /WP=CE17125 /TR=O45096 /GB=AAC02600.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=seven trans-membrane receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068931(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068931 NCBI Caenorhabditis elegans F57H12.4 (F57H12.4) mRNA, complete cds. 11/11 None
SNAP00000044152 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7971010:7973346:1 9/11 None
GENEFINDER00000044161 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7967441:7973346:1 9/11 None
F57H12.4 ENSEMBL cdna:known chromosome:CEL140:IV:7970198:7973788:1 gene:F57H12.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7970203-7973794(+) 100.0 100.0
Public Domain and Genome References
Gene Title seven trans-membrane receptor
Ensembl F57H12.4
Entrez Gene 186481 Entrez gene
SwissProt O45096 EMBL-EBI
WormBase CE17125 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
16855 racemase and epimerase activity, acting on amino acids and derivatives inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC02600 Hypothetical protein F57H12.4 [Caenorhabditis elegans] ref|NP_501332.1| F57H12.4 [Caenorhabditis elegans] 0.0
blast AAC02601 Hypothetical protein F57H12.5 [Caenorhabditis elegans] ref|NP_501331.1| F57H12.5 [Caenorhabditis elegans] 0.0
blast CAA90095 Hypothetical protein C07E3.4 [Caenorhabditis elegans] ref|NP_496231.1| C07E3.4 [Caenorhabditis elegans] 0.0
blast AAC02600 Hypothetical protein F57H12.4 [Caenorhabditis elegans] ref|NP_501332.1| F57H12.4 [Caenorhabditis elegans] 1.0E-175
blast AAC02600 Hypothetical protein F57H12.4 [Caenorhabditis elegans] ref|NP_501332.1| F57H12.4 [Caenorhabditis elegans] 1.0E-166
blast CAE70922 Hypothetical protein CBG17721 [Caenorhabditis briggsae] 1.0E-133
blast CAE70922 Hypothetical protein CBG17721 [Caenorhabditis briggsae] 1.0E-123
blast EAA01756 ENSANGP00000020874 [Anopheles gambiae str. PEST] ref|XP_321207.1| ENSANGP00000020874 [Anopheles gambiae str. PEST] 2.0E-24
Protein Domains
Database ID Description E-Value
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 9.8E-12
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 9.8E-12
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 2.4E-53
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 9.8E-12
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501332.1 6 21-43,85-107,181-200,228-250,281-303,318-340
F57H12.4 6 21-43,85-107,181-200,228-250,281-303,318-340
SNAP00000044152 6 5-27,52-74,95-117,145-167,198-220,235-257
GENEFINDER00000044161 5 638-660,681-703,731-753,784-806,821-843
Sequence
Target Sequence 
>C. ELEGANS:192091_AT
gtgagattggcttatcgagcacaagaagcaatggttcataatagtggaaaattgaataca
aaacgagaggatgcagagagaaaagtaacagtaatggcaacagtgatgacaatgatattc
atcatatgtaatattccacctggaatcaattatcttgtcgatcgatacagtaatcctaca
gtttataggcaaagaattccactttcaaatgttcttgtttgtgtaaatagtgcatcaaat
atgatgatatattgtgtattcaacagccgtttccgtcgagctgctctaaaacttctagga
tgtccatcattcttttcatccagacatggaagtgtatcaactaggttgacaagagaagaa
actactggaatgcttcgttctcgtgttgccacatacgagaatctacagagaagtatggaa
atgccagcagcatattcctcaaacaaatttccgattaaaaaaagaacaattaatctgatg
ctcatttttaaacatttagttgaagatgttcgttacgcaagtacaacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGAGATTGGCTTATCGAGCACAAG 576 483 769 Antisense
CACCTGGAATCAATTATCTTGTCGA 460 201 905 Antisense
TTGTCGATCGATACAGTAATCCTAC 330 707 923 Antisense
ATTCCACTTTCAAATGTTCTTGTTT 612 7 964 Antisense
GTCGAGCTGCTCTAAAACTTCTAGG 438 473 1043 Antisense
TAGGATGTCCATCATTCTTTTCATC 704 653 1064 Antisense
ACTACTGGAATGCTTCGTTCTCGTG 355 101 1129 Antisense
TTCGTTCTCGTGTTGCCACATACGA 687 693 1142 Antisense
GTTGCCACATACGAGAATCTACAGA 296 441 1153 Antisense
TGCCAGCAGCATATTCCTCAAACAA 502 585 1190 Antisense
GATGTTCGTTACGCAAGTACAACCA 347 397 1273 Antisense
Sequence Source Affymetrix Proprietary Database