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[192090_at] Thioredoxin ; FYVE zinc finger

Description T06G6.11 /REP_DB=WormBase Gene ID /WP=CE21156 /TR=Q9XUQ8 /GB=CAB04709.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Thioredoxin ; FYVE zinc finger
Cluster 6grp_total > 85      4grp_total > 16      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 2.4
(-3)
A 		10.8
(-1.6)
A 		10.7
(-1.6)
A 		39.2
(3)
A 		37
B 7.6
(-3)
A 		9.7
(-2.4)
A 		27
(2.8)
A 		27.7
(3)
A 		20
C 5
(-2.6)
A 		19.5
(2)
A 		3.6
(-3)
A 		22.8
(3)
A 		19
avr 5
(-3) 		13.3
(-1) 		13.8
(-0.9) 		29.9
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 7.5
(-2.4)
A 		6.7
(-2.6)
A 		4.8
(-3)
A 		7.9
(-2.3)
A 		32
(3)
A 		29.2
(2.4)
A 		27
B 9.2
(-2.7)
A 		9.9
(-2.5)
A 		9.4
(-2.6)
A 		38.7
(3)
A 		7.4
(-3)
A 		19.2
(-0.7)
A 		31
C 6.4
(-2.6)
A 		5.7
(-3)
A 		13.4
(1.5)
A 		14.9
(2.4)
A 		9
(-1.1)
A 		16
(3)
A 		10
avr 7.7
(-2.9) 		7.4
(-3) 		9.2
(-2.2) 		20.5
(2.6) 		16.1
(0.7) 		21.5
(3) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 0.9
(-3)
A 		2.3
(-1.3)
A 		2.8
(-0.6)
A 		5.7
(3)
A 		5
B 2.4
(-3)
A 		2.4
(-3)
A 		6.2
(3)
A 		5.9
(2.5)
A 		4
C 1.7
(-2.4)
A 		5.6
(3)
A 		1.3
(-3)
A 		3.9
(0.6)
A 		4
avr 1.7
(-3) 		3.4
(-0.1) 		3.4
(-0.1) 		5.2
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 1.4
(-2.8)
A 		2.4
(-2.1)
A 		1.1
(-3)
A 		2
(-2.4)
A 		9.7
(3)
A 		7.1
(1.2)
A 		9
B 3.2
(-2.3)
A 		3.3
(-2.2)
A 		2.3
(-3)
A 		10.2
(3)
A 		3
(-2.5)
A 		7.1
(0.6)
A 		8
C 2.4
(-1.8)
A 		1.7
(-3)
A 		3.4
(-0.2)
A 		3
(-0.8)
A 		2.9
(-1)
A 		5.3
(3)
A 		4
avr 2.3
(-3) 		2.5
(-2.7) 		2.3
(-3) 		5.1
(1) 		5.2
(1.1) 		6.5
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192090_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1759
Sequence Type Exemplar sequence
Representative Public ID T06G6.11 NCBI
Target Description T06G6.11 /REP_DB=WormBase Gene ID /WP=CE21156 /TR=Q9XUQ8 /GB=CAB04709.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Thioredoxin ; FYVE zinc finger
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060820(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060820 NCBI Caenorhabditis elegans T06G6.11 (T06G6.11) mRNA, complete cds. 11/11 None
SNAP00000021708 ENSEMBL cdna:SNAP chromosome:CEL140:I:12715634:12716626:-1 11/11 None
T06G6.11 ENSEMBL cdna:known chromosome:CEL140:I:12715634:12716626:-1 gene:T06G6.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000021720 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12715564-12716557(-) 100.0 100.0
Public Domain and Genome References
Gene Title Thioredoxin ; FYVE zinc finger
Ensembl T06G6.11
Entrez Gene 188201 Entrez gene
SwissProt Q9XUQ8 EMBL-EBI
WormBase CE21156 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04709 Hypothetical protein T06G6.11 [Caenorhabditis elegans] ref|NP_493221.1| T06G6.11 [Caenorhabditis elegans] 1.0E-164
blast CAB04709 Hypothetical protein T06G6.11 [Caenorhabditis elegans] ref|NP_493221.1| T06G6.11 [Caenorhabditis elegans] 1.0E-160
blast CAA87770 Hypothetical protein D2013.2 [Caenorhabditis elegans] ref|NP_495983.1| D2013.2 [Caenorhabditis elegans] sp|Q18964|YLN2_CAEEL Hypothetical WD-repeat protein D2013.2 in chromosome II 6.0E-83
blast CAE72913 Hypothetical protein CBG20231 [Caenorhabditis briggsae] 4.0E-77
blast CAA87770 Hypothetical protein D2013.2 [Caenorhabditis elegans] ref|NP_495983.1| D2013.2 [Caenorhabditis elegans] sp|Q18964|YLN2_CAEEL Hypothetical WD-repeat protein D2013.2 in chromosome II 4.0E-76
blast CAE72913 Hypothetical protein CBG20231 [Caenorhabditis briggsae] 2.0E-70
Protein Domains
Database ID Description E-Value
Pfam IPR006662 EMBL-EBI Thioredoxin type domain 0.0028
Pfam IPR000306 EMBL-EBI Zn-finger, FYVE type 2.3E-17
Pfam IPR000306 EMBL-EBI Zn-finger, FYVE type 2.3E-17
Sequence
Target Sequence 
>C. ELEGANS:192090_AT
aacattccagtatttcctgaaattcaatgtgttcctttcagatgcaatcacctcgctcac
atgggatggaaattagaaacagccaaacgtctcttctcggctgacgaacacggaaaactc
atgtgctgggatatgaattgcaagagagttgagacgcctgaatggaaaacttcgaattgt
tgtcaagaatgcaatcagccgttcttctggaatcttctagcaatgtggcagaggaaaatt
gtcggattaagactacatttctgtagaacgtgtggatcagcagtctgtggatcttgctgt
gacaactggaccacgtatccaccaatgggatataagacgaaaattcgcattagtaatgat
tgcaatgtacgaatgaaagacaatccacagaatttcaacctcactccacttgctgttccg
catgaaatctatactggaatcactgctatgcatctccaggaaactctcggaagtctagtt
accagtggcctatcgcgtgttaattatttgggatgttcgaagtgtttgctccgccacttc
cggatcacaataga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACATTCCAGTATTTCCTGAAATTC 261 139 223 Antisense
CAATGTGTTCCTTTCAGATGCAATC 18 183 247 Antisense
TTCCTTTCAGATGCAATCACCTCGC 634 699 254 Antisense
TAGAAACAGCCAAACGTCTCTTCTC 56 653 296 Antisense
ACGGAAAACTCATGTGCTGGGATAT 592 95 332 Antisense
AAGAATGCAATCAGCCGTTCTTCTG 351 151 407 Antisense
CTGTAGAACGTGTGGATCAGCAGTC 677 235 483 Antisense
TCCACTTGCTGTTCCGCATGAAATC 251 589 627 Antisense
TACCAGTGGCCTATCGCGTGTTAAT 568 649 702 Antisense
GCCTATCGCGTGTTAATTATTTGGG 120 283 710 Antisense
TCCGCCACTTCCGGATCACAATAGA 614 595 752 Antisense
Sequence Source Affymetrix Proprietary Database