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[192089_s_at] Phospholipase ADRAB-B (Rabbit)

Description F13H8.5 /REP_DB=WormBase Gene ID /WP=CE27128 /TR=Q19429 /GB=AAK31493.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=Phospholipase ADRAB-B (Rabbit)
Cluster 6grp_total > 92      4grp_total > 49      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 937
1 2 3 4 range
A 9.2
(-3)
A 		946.2
(3)
P 		745.9
(1.7)
P 		26.4
(-2.9)
A 		937
B 40.1
(-3)
A 		726.9
(2.2)
P 		840.1
(3)
P 		49.3
(-2.9)
A 		800
C 14.7
(-3)
A 		678.6
(1.8)
P 		842.1
(3)
P 		68.1
(-2.6)
A 		827
avr 21.3
(-3) 		783.9
(2.8) 		809.4
(3) 		47.9
(-2.8) 		788

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 321
1 2 3 4 5 6 range
A 56.5
(-3)
A 		346.8
(3)
P 		180.5
(-0.4)
A 		228.5
(0.6)
M 		312.8
(2.3)
P 		89.4
(-2.3)
A 		290
B 56.3
(-3)
A 		344.5
(3)
P 		189
(-0.2)
P 		183.5
(-0.4)
P 		273
(1.5)
P 		84.6
(-2.4)
A 		288
C 25.5
(-3)
A 		302.8
(2.2)
P 		191.7
(0.1)
A 		167.8
(-0.3)
A 		346.1
(3)
P 		88.3
(-1.8)
A 		321
avr 46.1
(-3) 		331.4
(3) 		187.1
(-0) 		193.3
(0.1) 		310.6
(2.6) 		87.4
(-2.1) 		285
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 290
1 2 3 4 range
A 3.3
(-3)
A 		205.4
(3)
P 		195
(2.7)
P 		3.9
(-3)
A 		202
B 12.8
(-2.9)
A 		179.5
(2.5)
P 		194.7
(3)
P 		10.5
(-3)
A 		184
C 4.9
(-3)
A 		195.1
(1)
P 		293.5
(3)
P 		11.5
(-2.9)
A 		289
avr 7
(-3) 		193.3
(2.1) 		227.7
(3) 		8.6
(-3) 		221

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 114
1 2 3 4 5 6 range
A 10.4
(-3)
A 		123.3
(3)
P 		39.3
(-1.5)
A 		58
(-0.5)
M 		94.4
(1.5)
P 		21.8
(-2.4)
A 		113
B 19.6
(-3)
A 		114.7
(3)
P 		45.9
(-1.3)
P 		48.6
(-1.2)
P 		110.9
(2.8)
P 		31.6
(-2.2)
A 		95
C 9.5
(-3)
A 		92.4
(1.9)
P 		48.8
(-0.7)
A 		33.7
(-1.6)
A 		112
(3)
P 		29.5
(-1.8)
A 		103
avr 13.2
(-3) 		110.1
(3) 		44.7
(-1) 		46.8
(-0.9) 		105.8
(2.7) 		27.6
(-2.1) 		97
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192089_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5647
Sequence Type Exemplar sequence
Representative Public ID F13H8.5 NCBI
Target Description F13H8.5 /REP_DB=WormBase Gene ID /WP=CE27128 /TR=Q19429 /GB=AAK31493.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=Phospholipase ADRAB-B (Rabbit)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062850(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062850 NCBI Caenorhabditis elegans F13H8.5 (F13H8.5) mRNA, complete cds. 11/11 None
SNAP00000031301 ENSEMBL cdna:SNAP chromosome:CEL140:II:6252942:6255975:-1 11/11 None
GENEFINDER00000031319 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6253076:6259903:-1 9/11 None
F13H8.5 ENSEMBL cdna:known chromosome:CEL140:II:6252723:6256022:-1 gene:F13H8.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6252938-6259900(-) 89.48 100.0
Public Domain and Genome References
Gene Title Phospholipase ADRAB-B (Rabbit)
Ensembl F13H8.5
Entrez Gene 174035 Entrez gene
SwissProt Q19429 EMBL-EBI
WormBase CE36821 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T16060 hypothetical protein F13H8.5 - Caenorhabditis elegans 0.0
blast AAL02483 Hypothetical protein F13H8.11 [Caenorhabditis elegans] ref|NP_495252.1| F13H8.11 [Caenorhabditis elegans] 0.0
blast CAE59275 Hypothetical protein CBG02607 [Caenorhabditis briggsae] 1.0E-158
blast AAK31493 Hypothetical protein F13H8.5 [Caenorhabditis elegans] ref|NP_495251.2| F13H8.5 [Caenorhabditis elegans] 1.0E-144
blast CAE59274 Hypothetical protein CBG02606 [Caenorhabditis briggsae] 1.0E-131
blast T16060 hypothetical protein F13H8.5 - Caenorhabditis elegans 4.0E-73
Protein Domains
Database ID Description E-Value
Pfam IPR002602 EMBL-EBI Protein of unknown function DB 7.6E-57
Pfam IPR002602 EMBL-EBI Protein of unknown function DB 2.5E-41
Sequence
Target Sequence 
>C. ELEGANS:192089_S_AT
ccacagcagcaattgacacgtccagctccagctcggccgcaaactagaagacctgttcca
cagccacaacaagcaacacgaccagctcctcgtccagttgctccaaagagccatttggca
caacaacctgctccagtgactgctccagttgccaagccaagaactgccagtgcaaaattc
ctccagtgctgcaagggacgtaaggtgcataattcttgcgaacgaatttgtagttttgat
gttctttcgaagaaagttctaactggaatgttccttggaactgatgcatgcccacaacat
cacggtctagatctgatgcagtgtgctgctgataatgatgatcacactgcatgctgtatt
gatcgagaagttgataaaacgtctgctggaaagaaatgccttggattctgtaacatgaaa
ccgggaattacattccaggctgatgtatcgatgcttccatgctggtctgtcctcaacgat
atcaagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCACAGCAGCAATTGACACGTCCAG 640 273 2428 Antisense
TCCAGCTCGGCCGCAAACTAGAAGA 104 591 2454 Antisense
ACTAGAAGACCTGTTCCACAGCCAC 414 101 2470 Antisense
CAGCCACAACAAGCAACACGACCAG 164 203 2488 Antisense
GAGCCATTTGGCACAACAACCTGCT 653 383 2535 Antisense
CTGCCAGTGCAAAATTCCTCCAGTG 43 237 2591 Antisense
ATTCCTCCAGTGCTGCAAGGGACGT 695 7 2604 Antisense
GGAACTGATGCATGCCCACAACATC 214 529 2704 Antisense
GATGATCACACTGCATGCTGTATTG 360 411 2764 Antisense
CAGGCTGATGTATCGATGCTTCCAT 340 209 2863 Antisense
TGGTCTGTCCTCAACGATATCAAGC 168 553 2890 Antisense
Sequence Source Affymetrix Proprietary Database