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[192088_s_at]

Description F53C3.13 /REP_DB=WormBase Gene ID /WP=CE20846 /TR=Q9TXU1 /GB=AAD34669.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=phosphatidic acid phosphatase
Cluster 6grp_highest_10_10 > 71      6grp_high1_10_10 > 28      4grp_highest_8_8 > 23      4grp_high_8_8 > 05      6grp_highest_nonorm > 77      6grp_total > 28      4grp_total > 03      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3232
1 2 3 4 range
A 905.4
(-2.5)
P 		669.3
(-2.9)
P 		635.3
(-3)
P 		3795.7
(3)
P 		3160
B 1121.5
(-1.9)
P 		631.3
(-3)
P 		656.8
(-2.9)
P 		3235.6
(3)
P 		2604
C 915.4
(-2.1)
P 		598.4
(-2.9)
P 		563.9
(-3)
P 		2876.7
(3)
P 		2313
avr 980.8
(-2.2) 		633
(-3) 		618.7
(-3) 		3302.7
(3) 		2684

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1307
1 2 3 4 5 6 range
A 2108.3
(3)
P 		981.2
(-2.8)
P 		1424.2
(-0.5)
P 		947.4
(-3)
P 		1455.4
(-0.4)
P 		1202
(-1.7)
P 		1161
B 1983
(3)
P 		1683.9
(-0.2)
P 		1429.3
(-2.9)
P 		1535.1
(-1.8)
P 		1418.4
(-3)
P 		1632.2
(-0.7)
P 		565
C 1351.9
(1.8)
P 		1489.8
(3)
P 		801.1
(-3)
P 		1281.7
(1.2)
P 		1009.4
(-1.2)
P 		1264.4
(1)
P 		689
avr 1814.4
(3) 		1385
(-1.3) 		1218.2
(-3) 		1254.7
(-2.6) 		1294.4
(-2.2) 		1366.2
(-1.5) 		596
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 544
1 2 3 4 range
A 329.7
(-0.3)
P 		145.3
(-3)
P 		166.1
(-2.7)
P 		555.6
(3)
P 		410
B 357.6
(-0.7)
P 		155.9
(-3)
P 		152.2
(-3)
P 		689.5
(3)
P 		537
C 303
(-0.5)
P 		172.1
(-3)
P 		196.5
(-2.5)
P 		485.1
(3)
P 		313
avr 330.1
(-0.5) 		157.8
(-3) 		171.6
(-2.8) 		576.7
(3) 		419

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 486
1 2 3 4 5 6 range
A 388.7
(1.5)
P 		349
(0.3)
P 		310.2
(-0.9)
P 		240.3
(-3)
P 		439.2
(3)
P 		292.7
(-1.4)
P 		199
B 690
(3)
P 		560.5
(0.7)
P 		347.1
(-3)
P 		406.6
(-2)
P 		576.3
(1)
P 		608.6
(1.6)
P 		343
C 501.1
(3)
P 		454.6
(2.1)
P 		203.9
(-3)
P 		257.7
(-1.9)
P 		326.6
(-0.5)
P 		423.3
(1.4)
P 		297
avr 526.6
(3) 		454.7
(1.2) 		287.1
(-3) 		301.5
(-2.6) 		447.4
(1) 		441.5
(0.9) 		240
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192088_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5106
Sequence Type Exemplar sequence
Representative Public ID F53C3.13 NCBI
Target Description F53C3.13 /REP_DB=WormBase Gene ID /WP=CE20846 /TR=Q9TXU1 /GB=AAD34669.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=phosphatidic acid phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182225(11), NM_182226(11), NM_062295(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182225 NCBI Caenorhabditis elegans F53C3.13b (F53C3.13) mRNA, complete cds. 11/11 None
NM_182226 NCBI Caenorhabditis elegans F53C3.13c (F53C3.13) mRNA, complete cds. 11/11 None
NM_062295 NCBI Caenorhabditis elegans F53C3.13a (F53C3.13) mRNA, complete cds. 11/11 None
F53C3.13b.1 ENSEMBL cdna:known chromosome:CEL140:II:3920588:3927901:-1 gene:F53C3.13 11/11 None
F53C3.13b.2 ENSEMBL cdna:known chromosome:CEL140:II:3920616:3927901:-1 gene:F53C3.13 11/11 None
F53C3.13c.3 ENSEMBL cdna:known chromosome:CEL140:II:3921601:3927977:-1 gene:F53C3.13 11/11 None
F53C3.13c.2 ENSEMBL cdna:known chromosome:CEL140:II:3921601:3927981:-1 gene:F53C3.13 11/11 None
F53C3.13c.1 ENSEMBL cdna:known chromosome:CEL140:II:3921601:3927975:-1 gene:F53C3.13 11/11 None
F53C3.13a ENSEMBL cdna:known chromosome:CEL140:II:3921658:3927901:-1 gene:F53C3.13 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000027230 2/11 Cross Hyb Matching Probes None
SNAP00000036984 7/11 Cross Hyb Matching Probes None
GENEFINDER00000036992 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3921710-3927900(-) 100.0 100.0
Public Domain and Genome References
Ensembl F53C3.13
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAN39672 Hypothetical protein F53C3.13b [Caenorhabditis elegans] ref|NP_872025.1| F53C3.13b [Caenorhabditis elegans] 0.0
blast AAD34669 Hypothetical protein F53C3.13a [Caenorhabditis elegans] ref|NP_494696.1| F53C3.13a [Caenorhabditis elegans] 1.0E-177
blast AAN39673 Hypothetical protein F53C3.13c [Caenorhabditis elegans] ref|NP_872026.1| F53C3.13c [Caenorhabditis elegans] 1.0E-173
blast AAD34669 Hypothetical protein F53C3.13a [Caenorhabditis elegans] ref|NP_494696.1| F53C3.13a [Caenorhabditis elegans] 1.0E-160
Protein Domains
Database ID Description E-Value
Pfam IPR000326 EMBL-EBI PA-phosphatase related phosphoesterase 7.9E-45
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_872025.1 6 12-34,62-84,105-127,179-201,208-230,240-262
NP_872026.1 6 12-34,62-84,105-127,179-201,208-230,240-262
NP_494696.1 6 12-34,62-84,105-127,179-201,208-230,240-262
F53C3.13b.1 6 12-34,62-84,105-127,179-201,208-230,240-262
F53C3.13b.2 6 12-34,62-84,105-127,179-201,208-230,240-262
F53C3.13c.3 6 12-34,62-84,105-127,179-201,208-230,240-262
F53C3.13c.2 6 12-34,62-84,105-127,179-201,208-230,240-262
F53C3.13c.1 6 12-34,62-84,105-127,179-201,208-230,240-262
F53C3.13a 6 12-34,62-84,105-127,179-201,208-230,240-262
Sequence
Target Sequence 
>C. ELEGANS:192088_S_AT
tatggatgtgtgccgcccggatattggctatcagacgtgctctcaacctgatctttatat
cactgatttcaagtgcaccactaccgacactaagaagatccacgaagctcaactttcctt
ctattctgggcactctgcgttcagtttctacgccgcctggttcacctccctgtaccttca
ggctcgcctattccgtccgttattctctcggcttttgcttccagttattcaatttctgtt
gttcggtggagcagcttatgtctcgttgactcgtgtttcggactataagcatcattggtc
ggatgtactggttggagcaattatgggaagtgcaattggagtatttgtggctctttttgt
tgccgaggtctttaagagacgtgagattccgtcgtgtggaccgtcgaatgagtttggatt
gattagaatggaccgtcctgacggagtgtcaaacgccaacggaaacggctcgaataccgt
agtctccacccaacacgtcatcgtttccgaagtggatccggcgaatcagcgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATGGATGTGTGCCGCCCGGATATT 318 655 435 Antisense
TATTGGCTATCAGACGTGCTCTCAA 625 665 456 Antisense
GTGCTCTCAACCTGATCTTTATATC 4 479 471 Antisense
GCACCACTACCGACACTAAGAAGAT 520 313 509 Antisense
GATCCACGAAGCTCAACTTTCCTTC 454 415 531 Antisense
CGGCTTTTGCTTCCAGTTATTCAAT 30 243 643 Antisense
GGAGCAGCTTATGTCTCGTTGACTC 111 521 682 Antisense
CTCGTTGACTCGTGTTTCGGACTAT 621 231 696 Antisense
TTCCGTCGTGTGGACCGTCGAATGA 81 699 821 Antisense
CGGCTCGAATACCGTAGTCTCCACC 187 241 900 Antisense
GAAGTGGATCCGGCGAATCAGCGAC 627 335 943 Antisense
Sequence Source Affymetrix Proprietary Database