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[192087_at]

Description ZK470.5 /REP_DB=WormBase Gene ID /WP=CE05090 /TR=Q23507 /GB=AAA80397.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=SH2-, SH3-, containing protein
Cluster 6grp_highest_10_10 > 02      6grp_high1_10_10 > 11      4grp_highest_8_8 > 34      4grp_high_8_8 > 57      6grp_highest_nonorm > 41      6grp_total > 23      4grp_total > 62      6grp_cgc > 60      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 445
1 2 3 4 range
A 850.8
(3)
P 		664.9
(-0.5)
P 		710.1
(0.3)
P 		532.8
(-3)
P 		318
B 722.7
(2.6)
P 		573.4
(-1)
P 		740
(3)
P 		489.1
(-3)
P 		251
C 933.6
(3)
P 		650
(-1.8)
P 		811.2
(0.9)
P 		579.7
(-3)
P 		354
avr 835.7
(3) 		629.4
(-1.1) 		753.8
(1.4) 		533.9
(-3) 		302

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 606
1 2 3 4 5 6 range
A 713.3
(0.8)
P 		743.3
(1.2)
P 		869.6
(3)
P 		771.3
(1.6)
P 		575
(-1.1)
P 		439.4
(-3)
P 		430
B 902.3
(3)
P 		788
(1.3)
P 		759.5
(0.9)
P 		739.7
(0.6)
P 		683.1
(-0.2)
P 		489.3
(-3)
P 		413
C 1045.7
(3)
P 		801.1
(0.2)
P 		722.8
(-0.7)
P 		761.8
(-0.2)
P 		724.3
(-0.7)
P 		520.5
(-3)
P 		525
avr 887.1
(3) 		777.5
(1.4) 		784
(1.5) 		757.6
(1.1) 		660.8
(-0.4) 		483.1
(-3) 		404
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 232
1 2 3 4 range
A 309.8
(3)
P 		144.3
(-1.3)
P 		185.6
(-0.2)
P 		78
(-3)
P 		232
B 230.5
(3)
P 		141.6
(-1.2)
P 		171.5
(0.2)
P 		104.2
(-3)
P 		126
C 309
(3)
P 		186.9
(-0.5)
P 		282.7
(2.3)
P 		97.8
(-3)
P 		211
avr 283.1
(3) 		157.6
(-1) 		213.3
(0.8) 		93.3
(-3) 		190

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 281
1 2 3 4 5 6 range
A 131.5
(-2.1)
P 		264.4
(3)
P 		189.4
(0.1)
P 		195.6
(0.4)
P 		173.5
(-0.5)
P 		107
(-3)
P 		157
B 314
(3)
P 		262.3
(0.6)
P 		184.4
(-2.9)
P 		195.9
(-2.4)
P 		277.5
(1.3)
P 		182.5
(-3)
P 		132
C 387.6
(3)
P 		244.4
(-0.7)
P 		184
(-2.2)
P 		153.2
(-3)
P 		234.4
(-0.9)
P 		174.2
(-2.5)
P 		234
avr 277.7
(3) 		257
(2) 		185.9
(-1.5) 		181.6
(-1.7) 		228.5
(0.6) 		154.6
(-3) 		123
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192087_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16051
Sequence Type Exemplar sequence
Representative Public ID ZK470.5 NCBI
Target Description ZK470.5 /REP_DB=WormBase Gene ID /WP=CE05090 /TR=Q23507 /GB=AAA80397.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=SH2-, SH3-, containing protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076306(11), NM_076305(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076306 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-22) (tag-22) mRNA, complete cds. 11/11 None
NM_076305 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-22) (tag-22) mRNA, complete cds. 11/11 None
SNAP00000000132 ENSEMBL cdna:SNAP chromosome:CEL140:X:4149040:4150590:-1 11/11 None
GENEFINDER00000000140 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4149040:4153393:-1 11/11 None
ZK470.5b.2 ENSEMBL cdna:known chromosome:CEL140:X:4148631:4151872:-1 gene:ZK470.5 11/11 A 
ZK470.5b.1 ENSEMBL cdna:known chromosome:CEL140:X:4148631:4153417:-1 gene:ZK470.5 11/11 A 
ZK470.5a.2 ENSEMBL cdna:known chromosome:CEL140:X:4148905:4153419:-1 gene:ZK470.5 11/11 None
ZK470.5a.1 ENSEMBL cdna:known chromosome:CEL140:X:4148905:4153417:-1 gene:ZK470.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4148877-4153394(-) 100.0 100.0
Public Domain and Genome References
Ensembl ZK470.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL11482 Temporarily assigned gene name protein 22, isoform a [Caenorhabditis elegans] ref|NP_508706.2| Temporarily Assigned Gene name family member (tag-22) [Caenorhabditis elegans] 0.0
blast T27877 hypothetical protein ZK470.5 - Caenorhabditis elegans 0.0
blast CAE68529 Hypothetical protein CBG14353 [Caenorhabditis briggsae] 1.0E-178
Protein Domains
Database ID Description E-Value
Pfam IPR000980 EMBL-EBI SH2 motif 2.6E-33
Pfam IPR001452 EMBL-EBI SH3 3.3E-20
Pfam IPR001452 EMBL-EBI SH3 4.5E-22
Pfam IPR000980 EMBL-EBI SH2 motif 2.6E-33
Pfam IPR001452 EMBL-EBI SH3 5.6E-20
Pfam IPR001452 EMBL-EBI SH3 3.3E-20
Pfam IPR001452 EMBL-EBI SH3 3.9E-22
Pfam IPR000980 EMBL-EBI SH2 motif 9.1E-16
Pfam IPR000980 EMBL-EBI SH2 motif 1.5E-9
Pfam IPR001452 EMBL-EBI SH3 3.3E-20
Pfam IPR001452 EMBL-EBI SH3 3.9E-22
Pfam IPR000980 EMBL-EBI SH2 motif 9.1E-16
Pfam IPR000980 EMBL-EBI SH2 motif 1.5E-9
Sequence
Target Sequence 
>C. ELEGANS:192087_AT
gtggatcatccagaacatgaccccgattggtggatggcgcgcaacgccagtggaaccaca
gggcttgtgccaagaaattacattgaggtagtggtcaacgactcatcatccagcaaagct
tcacatcaagatttcgcaccgcaatattcaggaaacggagaaattccgatggagcaacag
ccgtggtattttggacgcatctcgagggaacgtgctgaagatcttctactacatggtcgt
gagggagagtttctggtcagagattcggagagcaataagttgcaaaagttggttgagaag
ttgtgggatactaaagttgttcaaacagttgccaaacctggagacttgtcgatctcaatg
cgcggaatcgaacgcaacaagcatttcaaagtgcaaaacgtggatggtctcctgaaaatt
ggaaaccgaacgtttgtggacatgaatgctcttatcaatcactacacaaccagcccaatt
ttctcgtcgccaacggagaagctgtttttgaccggtcctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGATCATCCAGAACATGACCCCG 582 489 733 Antisense
ATGACCCCGATTGGTGGATGGCGCG 259 45 749 Antisense
GTGGAACCACAGGGCTTGTGCCAAG 232 491 782 Antisense
AACGACTCATCATCCAGCAAAGCTT 425 145 829 Antisense
GCTTCACATCAAGATTTCGCACCGC 592 305 850 Antisense
ATTCCGATGGAGCAACAGCCGTGGT 560 7 895 Antisense
GTGGTATTTTGGACGCATCTCGAGG 51 489 915 Antisense
GAAGATCTTCTACTACATGGTCGTG 456 337 949 Antisense
ACTTGTCGATCTCAATGCGCGGAAT 246 105 1076 Antisense
TGCTCTTATCAATCACTACACAACC 44 581 1179 Antisense
GAGAAGCTGTTTTTGACCGGTCCTC 470 391 1228 Antisense
Sequence Source Affymetrix Proprietary Database