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[192086_s_at] Sugar (and other) transporter

Description Y51A2D.18 /REP_DB=WormBase Gene ID /WP=CE22325 /TR=Q9XXQ4 /GB=CAA16411.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Sugar (and other) transporter
Cluster 6grp_highest_10_10 > 32      6grp_high1_10_10 > 13      4grp_highest_8_8 > 01      4grp_high_8_8 > 45      6grp_highest_nonorm > 61      6grp_total > 23      4grp_total > 50      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 579
1 2 3 4 range
A 506.9
(-1.5)
P 		784.1
(2.2)
P 		848
(3)
P 		395.5
(-3)
P 		453
B 562.8
(-0.7)
P 		839
(3)
P 		771
(2.1)
P 		393
(-3)
P 		446
C 494.3
(-2)
P 		971.6
(3)
P 		753.1
(0.7)
P 		403.8
(-3)
P 		568
avr 521.3
(-1.4) 		864.9
(3) 		790.7
(2) 		397.4
(-3) 		468

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 267
1 2 3 4 5 6 range
A 575.3
(3)
P 		484
(0.7)
P 		354.6
(-2.6)
P 		385.8
(-1.8)
P 		338.6
(-3)
P 		346.7
(-2.8)
P 		237
B 454.5
(1.3)
P 		510.4
(3)
P 		461.4
(1.5)
P 		418.5
(0.3)
P 		308.6
(-3)
P 		343.8
(-2)
P 		202
C 407.2
(-0.5)
P 		486.6
(1.6)
P 		542.1
(3)
P 		415.3
(-0.3)
P 		308.5
(-3)
P 		319
(-2.7)
P 		234
avr 479
(2.5) 		493.7
(3) 		452.7
(1.6) 		406.5
(0) 		318.6
(-3) 		336.5
(-2.4) 		175
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 221
1 2 3 4 range
A 184.5
(1.6)
P 		170.2
(1.1)
P 		221.7
(3)
P 		57.9
(-3)
P 		164
B 179.5
(1.7)
P 		207.2
(3)
P 		178.7
(1.6)
P 		83.8
(-3)
P 		123
C 163.6
(-0.3)
P 		279.3
(3)
P 		262.5
(2.5)
P 		68.1
(-3)
P 		211
avr 175.9
(1.2) 		218.9
(2.9) 		221
(3) 		69.9
(-3) 		151

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 106
(-1.2)
P 		172.1
(3)
P 		77.2
(-3)
P 		97.8
(-1.7)
P 		102.2
(-1.4)
P 		84.4
(-2.5)
P 		95
B 158.2
(1.8)
P 		169.9
(3)
P 		112
(-2.9)
P 		110.8
(-3)
P 		125.4
(-1.5)
P 		128.2
(-1.2)
P 		59
C 150.9
(3)
P 		148.5
(2.8)
P 		138
(1.9)
P 		83.5
(-3)
P 		99.8
(-1.5)
P 		106.8
(-0.9)
P 		67
avr 138.4
(0.7) 		163.5
(3) 		109.1
(-1.9) 		97.4
(-3) 		109.1
(-1.9) 		106.5
(-2.2) 		66
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192086_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14170
Sequence Type Exemplar sequence
Representative Public ID Y51A2D.18 NCBI
Target Description Y51A2D.18 /REP_DB=WormBase Gene ID /WP=CE22325 /TR=Q9XXQ4 /GB=CAA16411.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Sugar (and other) transporter
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075219(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075219 NCBI Caenorhabditis elegans Y51A2D.18 (Y51A2D.18) mRNA, complete cds. 11/11 None
GENEFINDER00000034272 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18483783:18489567:-1 11/11 None
Y51A2D.18 ENSEMBL cdna:known chromosome:CEL140:V:18483749:18489687:-1 gene:Y51A2D.18 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034241 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18483782-18489687(-) 100.0 100.0
Public Domain and Genome References
Gene Title Sugar (and other) transporter
Ensembl Y51A2D.18
Entrez Gene 180202 Entrez gene
SwissProt Q9XXQ4 EMBL-EBI
WormBase CE22325 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA16411 Hypothetical protein Y51A2D.18 [Caenorhabditis elegans] ref|NP_507620.1| Y51A2D.18 [Caenorhabditis elegans] 0.0
blast CAE67434 Hypothetical protein CBG12924 [Caenorhabditis briggsae] 0.0
blast CAE57033 Hypothetical protein CBG24916 [Caenorhabditis briggsae] 1.0E-101
blast CAB04250 Hypothetical protein F32H5.4 [Caenorhabditis elegans] ref|NP_506313.1| F32H5.4 [Caenorhabditis elegans] 1.0E-77
Protein Domains
Database ID Description E-Value
Pfam IPR005828 EMBL-EBI General substrate transporter 6.4E-8
Pfam IPR005828 EMBL-EBI General substrate transporter 6.4E-8
Pfam IPR005828 EMBL-EBI General substrate transporter 1.8E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507620.1 7 44-66,157-174,184-203,215-237,242-261,368-390,451-473
Y51A2D.18 7 44-66,157-174,184-203,215-237,242-261,368-390,451-473
GENEFINDER00000034272 8 5-27,117-134,147-165,175-197,202-221,290-312,354-376,437-459
Sequence
Target Sequence 
>C. ELEGANS:192086_S_AT
tatcaactacggtgtgctcttcaacatggaaaagctctccggctcaatttactggaactc
ggtatataccggactcatgcgatacgcctgtaacctatcatttggctacgctgatttgaa
attcaagtcaatcggccggaaatttattcatacaagtggtcttgtgattattgtgctctc
actgagcttggtagtcgggtcgtatgctttacacctaaaccacgagatgaaggatgttat
cagaatatcaattttactagccagttctatgacgtcgcagatttacatagcagatggtat
agtgtcggctgagctgtttcccacgccaattcgcacaattggatatgcatttttgcaact
ttggaaccgagttggagttgtactgtcaccgtttattttttatttggccgactactggtt
ggccctgcccttctgcttcatgatcctcttctcgctaattgacactttctccttcgagtg
tctactcccagaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATCAACTACGGTGTGCTCTTCAAC 407 659 972 Antisense
GGAAAAGCTCTCCGGCTCAATTTAC 690 527 999 Antisense
TACCGGACTCATGCGATACGCCTGT 451 649 1038 Antisense
GTAACCTATCATTTGGCTACGCTGA 175 463 1061 Antisense
CTGAGCTTGGTAGTCGGGTCGTATG 116 237 1153 Antisense
ACTAGCCAGTTCTATGACGTCGCAG 519 97 1227 Antisense
TATAGTGTCGGCTGAGCTGTTTCCC 59 661 1269 Antisense
TGGAGTTGTACTGTCACCGTTTATT 389 549 1344 Antisense
TTTGGCCGACTACTGGTTGGCCCTG 664 665 1374 Antisense
CTAATTGACACTTTCTCCTTCGAGT 164 227 1426 Antisense
TCCTTCGAGTGTCTACTCCCAGAAA 525 591 1441 Antisense
Sequence Source Affymetrix Proprietary Database