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[192083_at]

Description K01A2.7_rc /REP_DB=WormBase Gene ID /WP=CE19515 /TR=Q9TZ57 /GB=AAC69507.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /REVCOMP /DEF=cuticular collagen
Cluster 6grp_total > 11      4grp_total > 35      6grp_cgc > 54      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 40
(-3)
A 		86.2
(3)
A 		51.8
(-1.5)
A 		81.7
(2.4)
A 		46
B 66.6
(3)
A 		59.7
(2.1)
A 		21.4
(-3)
A 		58.6
(1.9)
A 		45
C 65.3
(-0.4)
A 		75.3
(3)
A 		57.4
(-3)
A 		66
(-0.1)
A 		18
avr 57.3
(-0.3) 		73.7
(3) 		43.5
(-3) 		68.8
(2) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 11.6
(-2.8)
A 		19.2
(-0.9)
A 		34.9
(3)
A 		11.7
(-2.7)
A 		10.6
(-3)
A 		20.7
(-0.5)
A 		24
B 35.7
(0.3)
A 		50.9
(2.8)
A 		41.6
(1.3)
A 		25.9
(-1.3)
A 		52.1
(3)
A 		15.9
(-3)
A 		36
C 21.2
(-2.3)
A 		45.9
(3)
A 		44.7
(2.7)
A 		17.7
(-3)
A 		37.1
(1.1)
A 		35.6
(0.8)
A 		28
avr 22.8
(-1.8) 		38.7
(2.5) 		40.4
(3) 		18.4
(-3) 		33.3
(1.1) 		24.1
(-1.4) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 14.6
(-0.7)
A 		18.7
(3)
A 		13.5
(-1.7)
A 		12
(-3)
A 		7
B 21.3
(3)
A 		14.7
(0.6)
A 		5
(-3)
A 		12.5
(-0.2)
A 		16
C 21.6
(3)
A 		21.6
(3)
A 		20
(2.1)
A 		11.1
(-3)
A 		11
avr 19.2
(3) 		18.3
(2.3) 		12.8
(-2.3) 		11.9
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 2.1
(-3)
A 		6.8
(2.1)
A 		7.6
(3)
A 		3
(-2)
A 		3.2
(-1.8)
A 		5
(0.2)
A 		6
B 12.4
(-0.4)
A 		16.9
(1.3)
A 		10.1
(-1.3)
A 		6.9
(-2.6)
A 		21.1
(3)
A 		5.9
(-3)
A 		15
C 7.9
(-0.5)
A 		14
(3)
A 		11.4
(1.5)
A 		3.6
(-3)
A 		12
(1.8)
A 		11.9
(1.8)
A 		10
avr 7.5
(-0.8) 		12.6
(3) 		9.7
(0.9) 		4.5
(-3) 		12.1
(2.6) 		7.6
(-0.7) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192083_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28122
Sequence Type Exemplar sequence
Representative Public ID K01A2.7 NCBI
Target Description K01A2.7_rc /REP_DB=WormBase Gene ID /WP=CE19515 /TR=Q9TZ57 /GB=AAC69507.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /REVCOMP /DEF=cuticular collagen
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) K01A2.7
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
K01A2.7 K01A2.7_rc /REP_DB=WormBase Gene ID /WP=CE19515 /TR=Q9TZ57 /GB=AAC69507.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /REVCOMP /DEF=cuticular collagen A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_061301 11/11 Negative Strand Matching Probes A 
SNAP00000016833 11/11 Negative Strand Matching Probes None
GENEFINDER00000016844 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:303922-305529(+) 100.0 100.0
Public Domain and Genome References
Ensembl K01A2.7
Sequence
Target Sequence 
>C. ELEGANS:192083_AT
ttccagaaggtccacaaggcccaacggcaccaggaggaccttgtggaccctggggacatt
gtatgcaacctggaatctcttgatcgtaagctataagggttacaccattggctcctggac
gtccatcgagaccccgagagcccggttctccaggagctccagggtaaccagtggggcctt
gtggtcctggtggacaattgttggcttgtggggcacaattgcattgctgttgtgttggat
gctgtaaaacgggtgcagtcgcataactattcactcttgcatacgaattcacttgctgcg
gagcataactatcataagatcgttttgcccagaatcgttttccggcatttccagagtttc
ctgtcgttgatggacttctggcttttcgaattgtcagtgacgtcatttcattccacgcgg
cgtcggagaagtacttccattcttttaaatcatccagagtctgctcccggaactcggaga
tttcccgtgacgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCAGAAGGTCCACAAGGCCCAAC 512 695 591 Antisense
CGGCACCAGGAGGACCTTGTGGACC 704 239 615 Antisense
ATAAGGGTTACACCATTGGCTCCTG 561 23 683 Antisense
GAGCTCCAGGGTAACCAGTGGGGCC 318 381 744 Antisense
GGTGCAGTCGCATAACTATTCACTC 668 499 842 Antisense
CATACGAATTCACTTGCTGCGGAGC 344 203 870 Antisense
GATCGTTTTGCCCAGAATCGTTTTC 588 417 908 Antisense
GCATTTCCAGAGTTTCCTGTCGTTG 24 307 935 Antisense
GGACTTCTGGCTTTTCGAATTGTCA 623 525 962 Antisense
TTTCATTCCACGCGGCGTCGGAGAA 98 673 996 Antisense
GAACTCGGAGATTTCCCGTGACGTC 445 349 1060 Antisense
Sequence Source Affymetrix Proprietary Database