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[192082_at] Sugar (and other) transporters

Description K08H10.6 /REP_DB=WormBase Gene ID /WP=CE18878 /TR=Q9XU83 /GB=CAB05545.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Sugar (and other) transporters
Cluster 6grp_total > 20      4grp_total > 24      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 151
1 2 3 4 range
A 5
(-3)
A 		54.1
(1.6)
A 		60
(2.1)
A 		69.6
(3)
A 		65
B 13.5
(-3)
A 		19.4
(-2.2)
A 		47.9
(1.4)
A 		60.3
(3)
A 		47
C 13.5
(-3)
A 		80.6
(-0.2)
A 		38.6
(-1.9)
A 		155.6
(3)
A 		142
avr 10.7
(-3) 		51.4
(-0.1) 		48.8
(-0.3) 		95.2
(3) 		85

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 176
1 2 3 4 5 6 range
A 3
(-3)
A 		85.2
(1)
A 		126.3
(3)
A 		72.5
(0.4)
A 		34.8
(-1.5)
A 		13.8
(-2.5)
A 		123
B 12.1
(-2.7)
A 		93.8
(1.3)
A 		94.5
(1.3)
A 		129.3
(3)
A 		100.2
(1.6)
A 		5.6
(-3)
A 		124
C 6.1
(-2.9)
A 		178.4
(3)
A 		82
(-0.3)
A 		108.8
(0.6)
A 		52.5
(-1.3)
A 		2.6
(-3)
A 		176
avr 7.1
(-3) 		119.1
(3) 		100.9
(2) 		103.5
(2.2) 		62.5
(-0) 		7.3
(-3) 		112
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 1.8
(-3)
A 		11.7
(1.3)
A 		15.7
(3)
A 		10.2
(0.6)
A 		14
B 4.3
(-3)
A 		4.8
(-2.6)
A 		11.1
(1.8)
A 		12.8
(3)
A 		9
C 4.5
(-3)
A 		23.2
(2.2)
A 		13.4
(-0.5)
A 		26.2
(3)
A 		22
avr 3.5
(-3) 		13.2
(1.5) 		13.4
(1.6) 		16.4
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 0.5
(-3)
A 		30.3
(3)
A 		27.5
(2.4)
A 		18.4
(0.6)
A 		10.5
(-1)
A 		3.4
(-2.4)
A 		30
B 4.2
(-2.7)
A 		31.2
(1.5)
A 		22.9
(0.2)
A 		34.3
(2)
A 		40.7
(3)
A 		2.1
(-3)
A 		39
C 2.3
(-2.8)
A 		54.4
(3)
A 		20.9
(-0.8)
A 		21.9
(-0.6)
A 		17
(-1.2)
A 		0.9
(-3)
A 		54
avr 2.3
(-3) 		38.6
(3) 		23.8
(0.6) 		24.9
(0.7) 		22.7
(0.4) 		2.1
(-3) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192082_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12513
Sequence Type Exemplar sequence
Representative Public ID K08H10.6 NCBI
Target Description K08H10.6 /REP_DB=WormBase Gene ID /WP=CE18878 /TR=Q9XU83 /GB=CAB05545.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Sugar (and other) transporters
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073171(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073171 NCBI Caenorhabditis elegans K08H10.6 (K08H10.6) mRNA, complete cds. 11/11 None
SNAP00000005149 ENSEMBL cdna:SNAP chromosome:CEL140:V:9996314:9998465:-1 11/11 None
GENEFINDER00000005163 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9995424:9998465:-1 11/11 None
K08H10.6 ENSEMBL cdna:known chromosome:CEL140:V:9996314:9998465:-1 gene:K08H10.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9996313-9998465(-) 100.0 100.0
Public Domain and Genome References
Gene Title Sugar (and other) transporters
Ensembl K08H10.6
Entrez Gene 187181 Entrez gene
SwissProt Q9XU83 EMBL-EBI
WormBase CE18878 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05545 Hypothetical protein K08H10.6 [Caenorhabditis elegans] ref|NP_505572.1| K08H10.6 [Caenorhabditis elegans] 0.0
blast CAE72298 Hypothetical protein CBG19428 [Caenorhabditis briggsae] 1.0E-178
blast CAE72298 Hypothetical protein CBG19428 [Caenorhabditis briggsae] 1.0E-176
blast CAB03186 Hypothetical protein K08F9.1 [Caenorhabditis elegans] ref|NP_506734.1| K08F9.1 [Caenorhabditis elegans] 3.0E-43
Protein Domains
Database ID Description E-Value
Pfam IPR005828 EMBL-EBI General substrate transporter 7.5E-39
Pfam IPR005828 EMBL-EBI General substrate transporter 2.4E-38
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505572.1 11 20-42,73-95,105-124,131-153,168-190,278-300,315-337,344-366,381-403,416-435,440-462
K08H10.6 11 20-42,73-95,105-124,131-153,168-190,278-300,315-337,344-366,381-403,416-435,440-462
SNAP00000005149 11 20-42,73-95,105-124,131-153,168-190,278-300,315-337,344-366,381-403,416-435,440-462
GENEFINDER00000005163 12 20-42,73-95,105-124,131-153,168-190,278-300,315-337,344-366,381-403,416-437,441-463,497-519
Sequence
Target Sequence 
>C. ELEGANS:192082_AT
gcattgtcacttgctgttgctatcaacttttcagtagcttttagtggtattgttgccatc
tcattcttcgggacgtttttattacaaacaattggattttcaccagagggatccgcagtg
gcaaacagtttatgcagttttgcatcgatagtttcagcactactagctgccatagctatg
gataagattggccgtcgtccacttcttatcacatctcttttagttcttgctcttataaat
atttttatgatgtccctggtattcttatacgactctacgaaagattcattcctcgcttgg
ccatttttggcattatttgtattattcacatttgtttttagcattggaattggaccggct
gcagtcttcattggagcagaacttgctccacctggaaccatttctaaaatgcagagttat
agcacttccgtacaatttgccggatcttttatttgtccaatcatttatctccaactagtc
gaatctattggcggatttgcatttatgttatttattgttccacttacaatcacagcagcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATTGTCACTTGCTGTTGCTATCA 507 307 844 Antisense
CCATCTCATTCTTCGGGACGTTTTT 701 269 899 Antisense
GAGGGATCCGCAGTGGCAAACAGTT 40 401 949 Antisense
ATCACATCTCTTTTAGTTCTTGCTC 629 27 1051 Antisense
TATGATGTCCCTGGTATTCTTATAC 376 655 1089 Antisense
TTCCTCGCTTGGCCATTTTTGGCAT 435 699 1132 Antisense
TGGAATTGGACCGGCTGCAGTCTTC 100 547 1188 Antisense
TGCTCCACCTGGAACCATTTCTAAA 657 581 1227 Antisense
ATAGCACTTCCGTACAATTTGCCGG 561 21 1262 Antisense
TGTCCAATCATTTATCTCCAACTAG 456 557 1297 Antisense
TGTTCCACTTACAATCACAGCAGCC 349 563 1359 Antisense
Sequence Source Affymetrix Proprietary Database