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[192080_at] seven trans-smembrane receptor

Description C49A9.7 /REP_DB=WormBase Gene ID /WP=CE16937 /TR=O44148 /GB=AAK29785.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=seven trans-smembrane receptor
Cluster 6grp_highest_10_10 > 07      6grp_high1_10_10 > 33      4grp_high_8_8 > 17      6grp_highest_nonorm > 80      6grp_total > 12      4grp_total > 30      6grp_highest_sub > 04      6grp_high1_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 184
1 2 3 4 range
A 222.2
(3)
P 		153.2
(-3)
A 		172.7
(-1.3)
P 		175.8
(-1)
P 		69
B 228.3
(3)
P 		177
(0.2)
P 		119.8
(-3)
M 		206.4
(1.8)
P 		109
C 296.9
(3)
P 		139.2
(-2.2)
P 		113.2
(-3)
P 		212.5
(0.2)
P 		184
avr 249.1
(3) 		156.5
(-1.9) 		135.2
(-3) 		198.2
(0.3) 		114

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 200
1 2 3 4 5 6 range
A 201.4
(0.3)
P 		290.3
(3)
P 		240.5
(1.5)
P 		276.3
(2.6)
P 		159.7
(-0.9)
P 		90.7
(-3)
P 		200
B 181.3
(1)
P 		193.4
(1.7)
P 		156.1
(-0.6)
P 		213.3
(3)
P 		195.9
(1.9)
P 		118.8
(-3)
P 		95
C 198.9
(-0.5)
P 		275.8
(3)
P 		206.6
(-0.1)
P 		230.5
(1)
P 		177.1
(-1.5)
P 		143.2
(-3)
P 		133
avr 193.9
(0.4) 		253.2
(3) 		201.1
(0.7) 		240
(2.4) 		177.6
(-0.3) 		117.6
(-3) 		136
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 80.9
(3)
P 		33.3
(-2.2)
A 		45.2
(-0.9)
P 		25.7
(-3)
P 		55
B 72.8
(3)
P 		43.7
(-0.9)
P 		27.7
(-3)
M 		44
(-0.8)
P 		45
C 98.3
(3)
P 		40
(-2.6)
P 		39.5
(-2.6)
P 		35.8
(-3)
P 		63
avr 84
(3) 		39
(-2.5) 		37.5
(-2.7) 		35.2
(-3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 37.1
(-1.9)
P 		103.2
(3)
P 		52.4
(-0.8)
P 		70.1
(0.6)
P 		48.2
(-1.1)
P 		22.1
(-3)
P 		81
B 63.1
(0.6)
P 		64.4
(0.8)
P 		37.9
(-3)
P 		56.5
(-0.3)
P 		79.6
(3)
P 		44.3
(-2.1)
P 		42
C 73.7
(1.3)
P 		84.2
(3)
P 		52.6
(-2)
P 		46.4
(-3)
P 		57.3
(-1.3)
P 		47.9
(-2.8)
P 		38
avr 58
(-0.4) 		83.9
(3) 		47.6
(-1.8) 		57.7
(-0.4) 		61.7
(0.1) 		38.1
(-3) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192080_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11137
Sequence Type Exemplar sequence
Representative Public ID C49A9.7 NCBI
Target Description C49A9.7 /REP_DB=WormBase Gene ID /WP=CE16937 /TR=O44148 /GB=AAK29785.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=seven trans-smembrane receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068529(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068529 NCBI Caenorhabditis elegans C49A9.7 (C49A9.7) mRNA, complete cds. 11/11 None
SNAP00000001919 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6202064:6205687:1 9/11 None
GENEFINDER00000001930 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6202064:6205687:1 10/11 None
C49A9.7 ENSEMBL cdna:known chromosome:CEL140:IV:6202064:6205687:1 gene:C49A9.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6202069-6205693(+) 100.0 100.0
Public Domain and Genome References
Gene Title seven trans-smembrane receptor
Ensembl C49A9.7
Entrez Gene 183595 Entrez gene
SwissProt O44148 EMBL-EBI
WormBase CE16937 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1582835_AT tachykinin receptor 3 cfa
CANINE_2:CFA.3676.1.S1_AT tachykinin receptor 3 cfa
CANINE_2:CFA.3676.1.S1_S_AT tachykinin receptor 3 cfa
CANINE_2:CFAAFFX.16953.1.S1_AT tachykinin receptor 3 cfa
CANINE_2:CFA.3676.1.A1_AT tachykinin receptor 3 cfa
DROSOPHILA_2:1623899_AT Tachykinin-like receptor at 99D dm
DROSGENOME1:143499_AT Tachykinin-like receptor at 99D dm
HG-U133_PLUS_2:208183_AT tachykinin receptor 3 hs
HG-U133A:208183_AT tachykinin receptor 3 hs
HG-FOCUS:208183_AT tachykinin receptor 3 hs
HG-U133A_2:208183_AT tachykinin receptor 3 hs
HG-U95AV2:32446_AT tachykinin receptor 3 hs
HUGENEFL:M89473_AT tachykinin receptor 3 hs
U133_X3P:G7669547_3P_AT tachykinin receptor 3 hs
MOE430A:1450278_AT tachykinin receptor 3 mm
MOUSE430A_2:1450278_AT tachykinin receptor 3 mm
MOUSE430_2:1450278_AT tachykinin receptor 3 mm
MOE430A:1437029_AT tachykinin receptor 3 mm
MOUSE430A_2:1437029_AT tachykinin receptor 3 mm
MOUSE430_2:1437029_AT tachykinin receptor 3 mm
MOE430B:1440803_X_AT tachykinin receptor 3 mm
MOUSE430_2:1440803_X_AT tachykinin receptor 3 mm
RN-U34:J05189_AT tachykinin receptor 3 rn
RG-U34A:J05189_AT tachykinin receptor 3 rn
RAE230A:1368752_AT tachykinin receptor 3 rn
RAT230_2:1368752_AT tachykinin receptor 3 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5886 plasma membrane inferred from electronic annotation QuickGO AmiGO
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
4995 tachykinin receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK29785 Hypothetical protein C49A9.7 [Caenorhabditis elegans] ref|NP_500930.1| C49A9.7 [Caenorhabditis elegans] 0.0
blast CAE61590 Hypothetical protein CBG05504 [Caenorhabditis briggsae] 0.0
blast AAK29785 Hypothetical protein C49A9.7 [Caenorhabditis elegans] ref|NP_500930.1| C49A9.7 [Caenorhabditis elegans] 5.0E-97
blast CAE61590 Hypothetical protein CBG05504 [Caenorhabditis briggsae] 6.0E-95
blast BAC54121.1 Uru-TK receptor [Urechis unicinctus] dbj|BAB87199.1| urechistachykinin receptor [Urechis unicinctus] 2.0E-59
Protein Domains
Database ID Description E-Value
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 2.5E-57
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 4.1E-17
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 5.3E-16
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500930.1 7 64-86,99-121,141-163,175-197,237-259,284-306,321-343
C49A9.7 7 64-86,99-121,141-163,175-197,237-259,284-306,321-343
SNAP00000001919 5 64-86,99-121,163-185,210-232,247-269
GENEFINDER00000001930 7 64-86,99-121,141-163,175-197,237-259,284-306,321-343
Sequence
Target Sequence 
>C. ELEGANS:192080_AT
gcatttttgttcggggttccagcatttcttgcgtcaaaggttgatgtctattacttctac
gatggttacacattatacgagaatccactgtgccttgcagacaattatcccggtggaaat
gaatcactacttggacaggtatacaacaacggactgataactgttcaatacattcttcca
ctatgcattttatcagctgcttattatcgagttggtgttgagctgagaaaggataaaacc
gtcggtgacgtgagacatgcaaaatcagtggccgcaaagaagaaggcgtcaatcatgttg
gcagtggttgtgttcattttcatgattgtctggttcccatacaatgcctactatctcaca
ttgcatttagttgagccaattgggaataaaatgttgagtctgtacatttatatcaacatc
tattggttgggaatgtcgtcaactgtcttcaatcctgtcatctattattttatgaacaaa
cgattccgtgtcggattccatcacgcattccgttggcttccattcgttcgttccgataaa
gatgaatatcaaacaattctttcacagacacgtccatctctgatgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATTTTTGTTCGGGGTTCCAGCAT 418 307 571 Antisense
GGTTGATGTCTATTACTTCTACGAT 239 507 609 Antisense
ATACGAGAATCCACTGTGCCTTGCA 569 23 645 Antisense
AATACATTCTTCCACTATGCATTTT 695 171 737 Antisense
GGCAGTGGTTGTGTTCATTTTCATG 256 537 870 Antisense
CATTTTCATGATTGTCTGGTTCCCA 533 215 885 Antisense
TTCCCATACAATGCCTACTATCTCA 527 697 904 Antisense
AATGTCGTCAACTGTCTTCAATCCT 93 165 1002 Antisense
GATTCCGTGTCGGATTCCATCACGC 21 433 1052 Antisense
CTTCCATTCGTTCGTTCCGATAAAG 166 219 1087 Antisense
TCACAGACACGTCCATCTCTGATGC 710 627 1132 Antisense
Sequence Source Affymetrix Proprietary Database