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[192077_at] Cell division control protein

Description C33F10.2 /REP_DB=WormBase Gene ID /WP=CE02529 /TR=Q18386 /GB=AAK31474.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=Cell division control protein
Cluster 6grp_highest_10_10 > 80      6grp_high1_10_10 > 08      4grp_high_8_8 > 24      6grp_highest_nonorm > 90      6grp_total > 18      4grp_total > 39      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 153
1 2 3 4 range
A 246.6
(3)
P 		133.7
(-1.6)
A 		98
(-3)
P 		174.3
(0.1)
P 		149
B 228.7
(3)
P 		93.8
(-3)
P 		128.5
(-1.5)
P 		106.6
(-2.4)
P 		135
C 179.9
(3)
P 		126.5
(-3)
P 		140.3
(-1.4)
P 		132.1
(-2.4)
P 		53
avr 218.4
(3) 		118
(-3) 		122.3
(-2.7) 		137.7
(-1.8) 		100

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 111
1 2 3 4 5 6 range
A 259.4
(3)
P 		201.1
(-0.5)
P 		160.5
(-3)
P 		224.7
(0.9)
P 		234.9
(1.5)
P 		197.1
(-0.8)
P 		99
B 217.2
(3)
P 		182.8
(-0.9)
P 		163.9
(-3)
P 		170
(-2.3)
P 		199.3
(1)
P 		184.8
(-0.6)
P 		53
C 190
(1)
P 		197.2
(1.7)
P 		210.6
(3)
P 		189.2
(0.9)
P 		148.6
(-3)
P 		170.8
(-0.9)
P 		62
avr 222.2
(3) 		193.7
(-0.9) 		178.3
(-3) 		194.6
(-0.8) 		194.3
(-0.8) 		184.2
(-2.2) 		44
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 89.8
(3)
P 		29
(-2.7)
A 		25.6
(-3)
P 		25.5
(-3)
P 		64
B 72.9
(3)
P 		23.2
(-2.9)
P 		29.8
(-2.2)
P 		22.7
(-3)
P 		50
C 59.6
(3)
P 		36.4
(-0.7)
P 		48.9
(1.3)
P 		22.3
(-3)
P 		37
avr 74.1
(3) 		29.5
(-2.3) 		34.8
(-1.7) 		23.5
(-3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 47.8
(-0.9)
P 		71.5
(3)
P 		35
(-3)
P 		57
(0.6)
P 		70.9
(2.9)
P 		48
(-0.9)
P 		37
B 75.6
(2.2)
P 		60.8
(0.1)
P 		39.8
(-3)
P 		45
(-2.2)
P 		81
(3)
P 		68.9
(1.2)
P 		41
C 70.4
(3)
P 		60.2
(1.1)
P 		53.6
(-0.1)
P 		38.1
(-3)
P 		48.1
(-1.1)
P 		57.2
(0.5)
P 		32
avr 64.6
(2.5) 		64.2
(2.4) 		42.8
(-3) 		46.7
(-2) 		66.7
(3) 		58
(0.8) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192077_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4347
Sequence Type Exemplar sequence
Representative Public ID C33F10.2 NCBI
Target Description C33F10.2 /REP_DB=WormBase Gene ID /WP=CE02529 /TR=Q18386 /GB=AAK31474.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=Cell division control protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062465(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062465 NCBI Caenorhabditis elegans C33F10.2 (C33F10.2) mRNA, complete cds. 11/11 None
SNAP00000016472 ENSEMBL cdna:SNAP chromosome:CEL140:II:4828547:4832335:1 10/11 None
GENEFINDER00000016481 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4828547:4832335:1 11/11 None
C33F10.2 ENSEMBL cdna:known chromosome:CEL140:II:4828547:4832484:1 gene:C33F10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4828545-4832334(+) 100.0 100.0
Public Domain and Genome References
Gene Title Cell division control protein
Ensembl C33F10.2
Entrez Gene 173832 Entrez gene
SwissProt Q18386 EMBL-EBI
WormBase CE02529 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1604828_AT similar to CG4041-PA cfa
CANINE_2:CFA.19456.1.S1_S_AT similar to CG4041-PA cfa
CANINE_2:CFAAFFX.17190.1.S1_S_AT similar to CG4041-PA cfa
DROSOPHILA_2:1629746_AT dm
DROSGENOME1:144500_AT dm
CHICKEN:GGAAFFX.6675.1.S1_S_AT similar to hypothetical protein MGC16169 gga
CHICKEN:GGAAFFX.6675.3.S1_S_AT similar to hypothetical protein MGC16169 gga
HU35KSUBA:RC_AA236950_AT hypothetical protein MGC16169 hs
U133_X3P:HS.8115.0.S1_3P_AT hypothetical protein MGC16169 hs
HG-U133_PLUS_2:226126_AT hypothetical protein MGC16169 hs
HG-U133B:226126_AT hypothetical protein MGC16169 hs
HG-U95C:48619_AT hypothetical protein MGC16169 hs
HG-U95B:52221_AT hypothetical protein MGC16169 hs
HG-U133_PLUS_2:240269_AT Hypothetical protein MGC16169 hs
HG-U133B:240269_AT Hypothetical protein MGC16169 hs
HG-U133_PLUS_2:244371_AT Hypothetical protein MGC16169 hs
HG-U133B:244371_AT Hypothetical protein MGC16169 hs
HG-U95C:65310_AT Hypothetical protein MGC16169 hs
HG-U95C:66451_AT Hypothetical protein MGC16169 hs
HG-U95D:67671_R_AT Hypothetical protein MGC16169 hs
HU35KSUBC:RC_W65394_AT Hypothetical protein MGC16169 hs
HU35KSUBB:RC_R34380_AT Hypothetical protein MGC16169 hs
HU35KSUBB:RC_R61780_AT Hypothetical protein MGC16169 hs
U133_X3P:HS.164923.0.A1_3P_AT Hypothetical protein MGC16169 hs
U133_X3P:HS.292986.0.A1_3P_AT Hypothetical protein MGC16169 hs
MOE430B:1445533_AT RIKEN cDNA A630047E20 gene, mRNA (cDNA clone IMAGE:5366255) mm
MOUSE430_2:1445533_AT RIKEN cDNA A630047E20 gene, mRNA (cDNA clone IMAGE:5366255) mm
RG-U34C:RC_AI235562_AT similar to RIKEN cDNA A630047E20 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_494866 C33F10.2 [Caenorhabditis elegans] gb|AAK31474.1| Hypothetical protein C33F10.2 [Caenorhabditis elegans] 0.0
blast CAE73200 Hypothetical protein CBG20603 [Caenorhabditis briggsae] 0.0
blast BAB85045.1 unnamed protein product [Homo sapiens] 5.0E-82
blast BAB85045.1 unnamed protein product [Homo sapiens] 7.0E-82
Protein Domains
Database ID Description E-Value
Pfam IPR000195 EMBL-EBI RabGAP/TBC domain 5.6E-11
Pfam IPR000719 EMBL-EBI Protein kinase 0.0096
Pfam IPR000719 EMBL-EBI Protein kinase 0.0081
Pfam IPR000195 EMBL-EBI RabGAP/TBC domain 5.6E-11
Pfam IPR000719 EMBL-EBI Protein kinase 0.0044
Pfam IPR000195 EMBL-EBI RabGAP/TBC domain 5.6E-11
Pfam IPR000719 EMBL-EBI Protein kinase 0.0081
Sequence
Target Sequence 
>C. ELEGANS:192077_AT
cttccactatccaaacttgtacttctttgggatgaaacaatgatgcatggaaatgcattc
ccattaatgattgctcttgccatgttgaaccgtctcagagataaacttttggctgtgaat
ttcaacgaaatgattatcataattcatgatcaacctgatttgtctatcgatgagattata
aaaaattcacgtggatatgagaagctcatccctccaagttgtacgttccgcgcccatgct
agtccatggaaaggtactagcctttcacttcaacaactttccagtattcattgtccacga
atgtcatcagaagagttaatatggagaattgaaagaaaaatggtttatgtgctagacacc
cggcaggaatcagaattccaatccgagcgattctccgactcttttaatcatccgaacaat
aaccatgaagctgacatcgattggctcagattcctgccaggaattgtttgcagtgaactg
ccaaagtgcttcgtgtatggaaagaatgacaaagaagctgccgagcgtctaaccgaagct
tatgtgatgaaaggagttccatatatttgcctacttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTCCACTATCCAAACTTGTACTTC 331 219 1864 Antisense
TTCCCATTAATGATTGCTCTTGCCA 422 697 1921 Antisense
TCTTGCCATGTTGAACCGTCTCAGA 598 615 1938 Antisense
TACTAGCCTTTCACTTCAACAACTT 674 643 2118 Antisense
ATGTGCTAGACACCCGGCAGGAATC 160 49 2210 Antisense
AGAATTCCAATCCGAGCGATTCTCC 635 75 2235 Antisense
TTCTCCGACTCTTTTAATCATCCGA 79 693 2254 Antisense
GACATCGATTGGCTCAGATTCCTGC 344 369 2296 Antisense
GTGAACTGCCAAAGTGCTTCGTGTA 53 481 2336 Antisense
TGCCGAGCGTCTAACCGAAGCTTAT 499 585 2382 Antisense
GGAGTTCCATATATTTGCCTACTTC 160 517 2416 Antisense
Sequence Source Affymetrix Proprietary Database