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[192076_at]

Description K02G10.7 /REP_DB=WormBase Gene ID /WP=CE04707 /TR=Q21159 /GB=AAK39253.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=transmembrane channel protein
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 22      4grp_high_8_8 > 54      6grp_highest_nonorm > 42      6grp_total > 12      4grp_total > 57      6grp_highest_sub > De      6grp_cgc > 51      6grp_high1_sub > De      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 934
1 2 3 4 range
A 287.7
(-1.7)
P 		869
(2.8)
P 		892
(3)
P 		112.6
(-3)
A 		779
B 252.2
(-2.1)
P 		1030.6
(3)
P 		1014.9
(2.9)
P 		113.3
(-3)
P 		917
C 318.6
(-1.3)
P 		901.8
(3)
P 		878.7
(2.8)
P 		97.1
(-3)
A 		805
avr 286.2
(-1.7) 		933.8
(3) 		928.5
(3) 		107.7
(-3) 		826

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 863
1 2 3 4 5 6 range
A 839.6
(2.4)
P 		921.5
(3)
P 		901.7
(2.9)
P 		711.6
(1.4)
P 		808
(2.1)
P 		128.8
(-3)
P 		793
B 901.8
(2.4)
P 		985.5
(3)
P 		804.1
(1.7)
P 		931.2
(2.6)
P 		785.9
(1.6)
P 		122.8
(-3)
P 		863
C 876.2
(2.7)
P 		916.8
(3)
P 		723.5
(1.5)
P 		849.1
(2.5)
P 		798.5
(2.1)
P 		130.2
(-3)
P 		787
avr 872.5
(2.5) 		941.3
(3) 		809.8
(2) 		830.6
(2.2) 		797.5
(1.9) 		127.3
(-3) 		814
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 290
1 2 3 4 range
A 104.7
(-0.6)
P 		188.6
(1.8)
P 		233.2
(3)
P 		16.5
(-3)
A 		217
B 80.4
(-1.5)
P 		254.5
(3)
P 		235.2
(2.5)
P 		24.2
(-3)
P 		230
C 105.5
(-1.2)
P 		259.3
(2)
P 		306.2
(3)
P 		16.4
(-3)
A 		290
avr 96.9
(-1) 		234.1
(2.4) 		258.2
(3) 		19
(-3) 		239

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 297
1 2 3 4 5 6 range
A 154.8
(-0.5)
P 		327.7
(3)
P 		196.4
(0.3)
P 		180.5
(0)
P 		243.8
(1.3)
P 		31.4
(-3)
P 		296
B 313.8
(2.7)
P 		328
(3)
P 		195.3
(0.2)
P 		246.6
(1.3)
P 		319.3
(2.8)
P 		45.8
(-3)
P 		282
C 324.8
(3)
P 		279.8
(2)
P 		184.1
(-0)
P 		170.8
(-0.3)
P 		258.4
(1.6)
P 		43.6
(-3)
P 		281
avr 264.5
(2) 		311.8
(3) 		191.9
(0.4) 		199.3
(0.5) 		273.8
(2.2) 		40.3
(-3) 		272
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192076_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16280
Sequence Type Exemplar sequence
Representative Public ID K02G10.7 NCBI
Target Description K02G10.7 /REP_DB=WormBase Gene ID /WP=CE04707 /TR=Q21159 /GB=AAK39253.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=transmembrane channel protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029586(9), NM_001029587(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029586 NCBI Caenorhabditis elegans AQuaPorin or aquaglyceroporin related family member (aqp-8) (aqp-8) mRNA, complete cds. 9/11 None
NM_001029587 NCBI Caenorhabditis elegans AQuaPorin or aquaglyceroporin related family member (aqp-8) (aqp-8) mRNA, complete cds. 11/11 None
GENEFINDER00000043400 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4702444:4704937:-1 11/11 None
K02G10.7a ENSEMBL cdna:known chromosome:CEL140:X:4703008:4704937:-1 gene:K02G10.7 9/11 None
K02G10.7b ENSEMBL cdna:known chromosome:CEL140:X:4703131:4704937:-1 gene:K02G10.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000043396 4/11 Cross Hyb Matching Probes None
SNAP00000043397 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4703102-4704938(-) 100.0 100.0
Public Domain and Genome References
Ensembl K02G10.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAP68935 Aquaporin or aquaglyceroporin related protein 8, isoform b [Caenorhabditis elegans] ref|NP_001024758.1| AQuaPorin or aquaglyceroporin related family member (aqp-8) [Caenorhabditis elegans] 1.0E-170
blast T16540 hypothetical protein K02G10.7 - Caenorhabditis elegans 1.0E-162
blast T16540 hypothetical protein K02G10.7 - Caenorhabditis elegans 1.0E-161
blast AAP68935 Aquaporin or aquaglyceroporin related protein 8, isoform b [Caenorhabditis elegans] ref|NP_001024758.1| AQuaPorin or aquaglyceroporin related family member (aqp-8) [Caenorhabditis elegans] 1.0E-161
blast AAP68934 Aquaporin or aquaglyceroporin related protein 8, isoform a [Caenorhabditis elegans] ref|NP_001024757.1| AQuaPorin or aquaglyceroporin related family member (aqp-8) [Caenorhabditis elegans] 1.0E-150
blast AAP68935 Aquaporin or aquaglyceroporin related protein 8, isoform b [Caenorhabditis elegans] ref|NP_001024758.1| AQuaPorin or aquaglyceroporin related family member (aqp-8) [Caenorhabditis elegans] 1.0E-144
blast AAP68934 Aquaporin or aquaglyceroporin related protein 8, isoform a [Caenorhabditis elegans] ref|NP_001024757.1| AQuaPorin or aquaglyceroporin related family member (aqp-8) [Caenorhabditis elegans] 1.0E-144
Protein Domains
Database ID Description E-Value
Pfam IPR000425 EMBL-EBI Major intrinsic protein 6.0E-27
Pfam IPR000425 EMBL-EBI Major intrinsic protein 2.8E-12
Pfam IPR000425 EMBL-EBI Major intrinsic protein 1.6E-46
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024757.1 4 23-45,55-77,97-119,198-220
NP_001024758.1 6 23-45,55-77,97-119,152-174,181-203,234-256
K02G10.7a 4 23-45,55-77,97-119,198-220
K02G10.7b 6 23-45,55-77,97-119,152-174,181-203,234-256
GENEFINDER00000043400 6 23-45,55-77,97-119,152-174,181-203,234-256
Sequence
Target Sequence 
>C. ELEGANS:192076_AT
aagcattctcggaaatctgcctccatggaagatcattccatatgccattgctcaagttat
tggagcattcctcggcgcagctgttgcctattttggacatcacgacgatctgtggaagct
ggacggcggcatccgtcaggtgactggaggtcaagccaccgctggactgttcaccacgtt
cccaccggatcacatgtcagtatggggaagtcttctcgaccagattattggaacagccat
gctgtctggcttggtctgtcttatcactgataaacgccaccaaatcccgaccggtgttgt
tcctgttcttgctggaagtattatgagcatggtcgcaatgacttttggagctaacggcgg
atttgcaatcaacccagctcgtgacttcggaccacgcgttttctgcctctgtgccggata
tggctgggaagttttcagcgctcatggatattatttctggattccaattgttggtgctct
catcggttcgatcattggagcctgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCATTCTCGGAAATCTGCCTCCA 493 151 270 Antisense
GATCATTCCATATGCCATTGCTCAA 180 421 300 Antisense
GTTGCCTATTTTGGACATCACGACG 277 441 352 Antisense
GACGATCTGTGGAAGCTGGACGGCG 317 379 373 Antisense
GGTGACTGGAGGTCAAGCCACCGCT 414 501 408 Antisense
GGGGAAGTCTTCTCGACCAGATTAT 474 485 473 Antisense
ACAGCCATGCTGTCTGGCTTGGTCT 284 109 502 Antisense
GCTTGGTCTGTCTTATCACTGATAA 435 307 518 Antisense
GCCTCTGTGCCGGATATGGCTGGGA 403 281 674 Antisense
GGAAGTTTTCAGCGCTCATGGATAT 593 531 696 Antisense
ATCGGTTCGATCATTGGAGCCTGGA 364 35 751 Antisense
Sequence Source Affymetrix Proprietary Database