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[192074_at] Sugar (and other) transporters

Description Y51B9A.6 /REP_DB=WormBase Gene ID /WP=CE19216 /TR=Q9XXC1 /GB=CAA19541.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Sugar (and other) transporters
Cluster 4grp_high_8_8 > 21      6grp_total > 34      4grp_total > 19      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 180
1 2 3 4 range
A 88.1
(-1.2)
P 		115.6
(-0.3)
P 		35.5
(-3)
A 		215
(3)
P 		180
B 96.8
(-1.6)
P 		98.9
(-1.3)
P 		86
(-3)
P 		131.8
(3)
P 		46
C 91.9
(-1.9)
P 		101.7
(-1.3)
A 		75.6
(-3)
P 		167.7
(3)
P 		92
avr 92.3
(-1.5) 		105.4
(-0.7) 		65.7
(-3) 		171.5
(3) 		106

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 126
1 2 3 4 5 6 range
A 138.3
(3)
P 		61.5
(-2)
P 		95.8
(0.2)
P 		54
(-2.5)
A 		46.5
(-3)
A 		71.2
(-1.4)
A 		92
B 142
(3)
P 		120.2
(1.6)
P 		113.6
(1.2)
P 		49
(-3)
A 		48.7
(-3)
A 		73.2
(-1.4)
P 		93
C 148.1
(3)
P 		93.9
(0.4)
P 		121.5
(1.7)
P 		80
(-0.2)
P 		21.9
(-3)
A 		80
(-0.2)
P 		126
avr 142.8
(3) 		91.9
(0.1) 		110.3
(1.1) 		61
(-1.7) 		39
(-3) 		74.8
(-0.9) 		104
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 32.1
(3)
P 		25.1
(1.2)
P 		9.3
(-3)
A 		31.5
(2.8)
P 		23
B 30.9
(3)
P 		24.4
(-0.5)
P 		19.9
(-3)
P 		28.1
(1.5)
P 		11
C 30.4
(3)
P 		29.2
(1.2)
A 		26.3
(-3)
P 		28.3
(-0.1)
P 		4
avr 31.1
(3) 		26.2
(0.7) 		18.5
(-3) 		29.3
(2.1) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 25.5
(3)
P 		21.9
(1.2)
P 		20.9
(0.7)
P 		13.7
(-3)
A 		14
(-2.8)
A 		17.3
(-1.2)
A 		12
B 49.4
(3)
P 		40
(1.5)
P 		27.6
(-0.6)
P 		13
(-3)
A 		19.8
(-1.9)
A 		27.3
(-0.6)
P 		36
C 54.9
(3)
P 		28.7
(-0.3)
P 		30.9
(-0)
P 		16.1
(-1.9)
P 		7.1
(-3)
A 		26.8
(-0.5)
P 		48
avr 43.3
(3) 		30.2
(0.4) 		26.5
(-0.4) 		14.3
(-2.9) 		13.6
(-3) 		23.8
(-0.9) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192074_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2803
Sequence Type Exemplar sequence
Representative Public ID Y51B9A.6 NCBI
Target Description Y51B9A.6 /REP_DB=WormBase Gene ID /WP=CE19216 /TR=Q9XXC1 /GB=CAA19541.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Sugar (and other) transporters
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063604(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063604 NCBI Caenorhabditis elegans Y51B9A.6 (Y51B9A.6) mRNA, complete cds. 11/11 None
SNAP00000039074 ENSEMBL cdna:SNAP chromosome:CEL140:II:9400736:9403049:-1 11/11 None
GENEFINDER00000039086 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9400736:9403049:-1 11/11 None
Y51B9A.6 ENSEMBL cdna:known chromosome:CEL140:II:9400629:9403099:-1 gene:Y51B9A.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9400732-9403046(-) 100.0 100.0
Public Domain and Genome References
Gene Title Sugar (and other) transporters
Ensembl Y51B9A.6
Entrez Gene 190139 Entrez gene
SwissProt Q9XXC1 EMBL-EBI
WormBase CE19216 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19541 Hypothetical protein Y51B9A.6 [Caenorhabditis elegans] ref|NP_496005.1| Y51B9A.6 [Caenorhabditis elegans] 0.0
blast CAE57958 Hypothetical protein CBG01018 [Caenorhabditis briggsae] 0.0
blast CAE66193 Hypothetical protein CBG11431 [Caenorhabditis briggsae] 5.0E-53
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496005.1 12 32-54,103-125,132-154,158-180,193-215,220-242,281-303,323-345,358-375,385-404,417-439,454-473
Y51B9A.6 12 32-54,103-125,132-154,158-180,193-215,220-242,281-303,323-345,358-375,385-404,417-439,454-473
SNAP00000039074 12 32-54,103-125,132-154,158-180,193-215,220-242,281-303,323-345,358-375,385-404,417-439,454-473
GENEFINDER00000039086 12 32-54,103-125,132-154,158-180,193-215,220-242,281-303,323-345,358-375,385-404,417-439,454-473
Sequence
Target Sequence 
>C. ELEGANS:192074_AT
ctatttgcgcggtgttatcggctgcacgcccactgaagctggacttttgacacttattcc
aatggcttgtttgctcgtcataaaattcagcactggattcttttcggatcgcatcaagtc
catctctgacctcacaaaaatgaaaatgttcaactcgtgcgctctccttggctcttcaat
tttcttcattattctttcatgttccagtccaggaggaagcaaagtattggatgtcatact
gctttcaattcctatggctctcctagggttttcttccggcggatacagcaagtgtgctgt
tatggtttccggacaatactctccatttgttatgtctattgtgcagataattgcctgctc
atccctaatggctggaagcttcttggtcccagctctgaccccatccgatagcttcagcga
atggcaaagagtttttatgatttacggagcagtgcttgcaattacaaatactattttcat
tgttttcgccagagctgaacctgcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTATTTGCGCGGTGTTATCGGCTGC 565 221 942 Antisense
TATTCCAATGGCTTGTTTGCTCGTC 106 665 996 Antisense
AGCACTGGATTCTTTTCGGATCGCA 491 75 1030 Antisense
AGTCCATCTCTGACCTCACAAAAAT 331 61 1058 Antisense
GATGTCATACTGCTTTCAATTCCTA 615 409 1171 Antisense
AATTCCTATGGCTCTCCTAGGGTTT 574 175 1188 Antisense
CAAGTGTGCTGTTATGGTTTCCGGA 582 183 1230 Antisense
TGGTTTCCGGACAATACTCTCCATT 617 551 1244 Antisense
CCTGCTCATCCCTAATGGCTGGAAG 635 265 1295 Antisense
GCTGGAAGCTTCTTGGTCCCAGCTC 151 295 1312 Antisense
GTTTTCGCCAGAGCTGAACCTGCAA 112 449 1423 Antisense
Sequence Source Affymetrix Proprietary Database