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[192073_s_at]

Description F42G4.3A /REP_DB=WormBase Gene ID /WP=CE23716 /TR=Q9U3F4 /GB=CAB03095.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=LIM domain containing proteins
Cluster 6grp_highest_10_10 > 40      6grp_high1_10_10 > 05      4grp_highest_8_8 > 40      4grp_high_8_8 > 43      6grp_highest_nonorm > 02      6grp_total > 06      4grp_total > 53      6grp_highest_sub > De      6grp_cgc > 21      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2362
1 2 3 4 range
A 3483.5
(3)
P 		3400.3
(2.7)
P 		2460.9
(-0.5)
P 		1744.4
(-3)
P 		1739
B 3513.8
(3)
P 		2933.9
(1.3)
P 		2642.4
(0.4)
P 		1482.8
(-3)
P 		2031
C 3630.1
(3)
P 		3214.9
(1.9)
P 		2328.5
(-0.3)
P 		1268.6
(-3)
P 		2362
avr 3542.5
(3) 		3183
(1.9) 		2477.3
(-0.1) 		1498.6
(-3) 		2044

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2394
1 2 3 4 5 6 range
A 2325.5
(1.3)
P 		2564.5
(3)
P 		2211.1
(0.5)
P 		1729.2
(-3)
P 		2084.1
(-0.5)
P 		2192
(0.3)
P 		835
B 2809.9
(3)
P 		2573.3
(1.8)
P 		2409.2
(1)
P 		2223.9
(0.1)
P 		1596.8
(-3)
P 		1587.2
(-3)
P 		1223
C 3777.5
(3)
P 		2270.9
(-0.8)
P 		2625.3
(0.1)
P 		1892
(-1.7)
P 		2305.6
(-0.7)
P 		1383.1
(-3)
P 		2394
avr 2971
(3) 		2469.6
(0.6) 		2415.2
(0.3) 		1948.4
(-1.9) 		1995.5
(-1.7) 		1720.8
(-3) 		1250
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1054
1 2 3 4 range
A 1268.3
(3)
P 		738.1
(-0.1)
P 		643.3
(-0.7)
P 		255.3
(-3)
P 		1013
B 1120.5
(3)
P 		724.6
(0)
P 		612.3
(-0.8)
P 		316
(-3)
P 		805
C 1201.7
(3)
P 		924.3
(1.3)
P 		811.6
(0.6)
P 		213.9
(-3)
P 		988
avr 1196.8
(3) 		795.7
(0.4) 		689.1
(-0.3) 		261.7
(-3) 		935

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1020
1 2 3 4 5 6 range
A 428.7
(-3)
P 		912.1
(3)
P 		481.5
(-2.3)
P 		438.6
(-2.9)
P 		628.9
(-0.5)
P 		533.7
(-1.7)
P 		483
B 977.7
(3)
P 		856.5
(1.1)
P 		585
(-3)
P 		589
(-2.9)
P 		648.8
(-2)
P 		591.9
(-2.9)
P 		393
C 1400.2
(3)
P 		692.9
(-1.2)
P 		668.2
(-1.3)
P 		380.5
(-3)
P 		746.1
(-0.8)
P 		463
(-2.5)
P 		1020
avr 935.5
(3) 		820.5
(1.5) 		578.2
(-1.6) 		469.4
(-3) 		674.6
(-0.4) 		529.5
(-2.2) 		466
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192073_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2759
Sequence Type Exemplar sequence
Representative Public ID F42G4.3A NCBI
Target Description F42G4.3A /REP_DB=WormBase Gene ID /WP=CE23716 /TR=Q9U3F4 /GB=CAB03095.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=LIM domain containing proteins
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064375(11), NM_064376(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064375 NCBI Caenorhabditis elegans ZYXin family member (zyx-1) (zyx-1) mRNA, complete cds. 11/11 None
NM_064376 NCBI Caenorhabditis elegans ZYXin family member (zyx-1) (zyx-1) mRNA, complete cds. 11/11 None
SNAP00000028438 ENSEMBL cdna:SNAP chromosome:CEL140:II:13068311:13070266:1 10/11 None
GENEFINDER00000028447 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13056864:13076001:1 11/11 None
F42G4.3a.1 ENSEMBL cdna:known chromosome:CEL140:II:13056710:13070864:1 gene:F42G4.3 11/11 None
F42G4.3a.2 ENSEMBL cdna:known chromosome:CEL140:II:13056991:13070863:1 gene:F42G4.3 11/11 None
F42G4.3b.2 ENSEMBL cdna:known chromosome:CEL140:II:13064780:13070545:1 gene:F42G4.3 11/11 None
F42G4.3b.1 ENSEMBL cdna:known chromosome:CEL140:II:13066998:13070545:1 gene:F42G4.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13057044-13070542(+) 100.0 100.0
Public Domain and Genome References
Ensembl F42G4.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03095 Hypothetical protein F42G4.3a [Caenorhabditis elegans] ref|NP_496776.1| ZYXin family member (zyx-1) [Caenorhabditis elegans] 0.0
blast CAE59426 Hypothetical protein CBG02797 [Caenorhabditis briggsae] 0.0
blast CAB03095 Hypothetical protein F42G4.3a [Caenorhabditis elegans] ref|NP_496776.1| ZYXin family member (zyx-1) [Caenorhabditis elegans] 1.0E-178
blast CAE59426 Hypothetical protein CBG02797 [Caenorhabditis briggsae] 1.0E-141
blast CAB03094 Hypothetical protein F42G4.5 [Caenorhabditis elegans] ref|NP_496778.2| F42G4.5 [Caenorhabditis elegans] 1.0E-113
blast CAB03096 Hypothetical protein F42G4.3b [Caenorhabditis elegans] ref|NP_496777.1| ZYXin family member (zyx-1) [Caenorhabditis elegans] 1.0E-107
Protein Domains
Database ID Description E-Value
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 9.9E-14
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 3.0E-11
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 5.0E-9
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 7.3E-9
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 3.0E-11
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 5.0E-9
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 9.9E-14
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 3.0E-11
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 3.1E-8
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 9.9E-14
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 3.0E-11
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 3.1E-8
Sequence
Target Sequence 
>C. ELEGANS:192073_S_AT
tcaccggagaccagccaggatgcaatgcaatgaatcagatcttccacgtggattgcttca
aatgtggtcagtgctcgaagacacttgccggcgcctccttctacaatatcgatgataagc
cgacatgtgaaggctgctatcagaactcactggagaagtgtaccgcgtgcaaccgagcga
tcagtgacaaacttttgagagcctgtggaggggtctaccatgtgaactgcttcgtgtgct
tctcctgcaaaaagtctctcgatggaattccttttactcttgacaaggacaacaatgtgc
actgtgtcccatgcttccatgacaaattcgcgccacgatgtgcactctgcagtaagccca
tagttccacaagacggagaaaaggagtcggttcgtgtcgtagccatggataaatcatttc
acgttgactgctacaaatgcgaagactgtggaatgcaattgtcatcaaagctggaaggcc
aaggatgctacccaatcgataaccacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCACCGGAGACCAGCCAGGATGCAA 594 623 1265 Antisense
GTCAGTGCTCGAAGACACTTGCCGG 253 465 1331 Antisense
CGCCTCCTTCTACAATATCGATGAT 239 257 1356 Antisense
ACCATGTGAACTGCTTCGTGTGCTT 194 87 1481 Antisense
GTGCTTCTCCTGCAAAAAGTCTCTC 9 481 1500 Antisense
GATGGAATTCCTTTTACTCTTGACA 81 407 1525 Antisense
ACAATGTGCACTGTGTCCCATGCTT 78 115 1556 Antisense
GATGTGCACTCTGCAGTAAGCCCAT 134 409 1601 Antisense
GTAAGCCCATAGTTCCACAAGACGG 379 461 1616 Antisense
TCGGTTCGTGTCGTAGCCATGGATA 137 607 1651 Antisense
GGATGCTACCCAATCGATAACCACC 57 513 1747 Antisense
Sequence Source Affymetrix Proprietary Database