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[192071_at]

Description F49H12.1 /REP_DB=WormBase Gene ID /WP=CE28437 /TR=Q9N5S3 /GB=AAF39827.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=C2H2-type zinc finger protein
Cluster 6grp_highest_10_10 > 71      6grp_high1_10_10 > 28      4grp_highest_8_8 > 56      4grp_high_8_8 > 27      6grp_highest_nonorm > 70      6grp_total > 28      4grp_total > 37      6grp_highest_sub > De      6grp_cgc > 12      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 224
1 2 3 4 range
A 417.5
(2.6)
P 		428.3
(3)
P 		263.6
(-3)
P 		393.2
(1.7)
P 		165
B 392.2
(2)
P 		407.2
(3)
P 		322.2
(-2.6)
P 		315.8
(-3)
P 		91
C 487.5
(3)
P 		411.9
(0.6)
P 		299.4
(-3)
P 		392.2
(-0)
P 		188
avr 432.4
(3) 		415.8
(2.3) 		295.1
(-3) 		367.1
(0.1) 		137

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 451
1 2 3 4 5 6 range
A 339.2
(2.7)
P 		346.8
(3)
P 		194.9
(-3)
P 		233.5
(-1.5)
P 		257.4
(-0.5)
P 		324.9
(2.1)
P 		152
B 316
(3)
P 		277.9
(1)
P 		209.4
(-2.7)
P 		204.8
(-2.9)
P 		203
(-3)
P 		237
(-1.2)
P 		113
C 645.7
(3)
P 		244.6
(-2.3)
P 		298.4
(-1.6)
P 		194.3
(-3)
P 		336.4
(-1.1)
P 		238.6
(-2.4)
P 		451
avr 433.6
(3) 		289.8
(-0.9) 		234.2
(-2.4) 		210.9
(-3) 		265.6
(-1.5) 		266.8
(-1.5) 		223
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 152
(3)
P 		93
(-0.8)
P 		68.9
(-2.3)
P 		57.6
(-3)
P 		94
B 125.1
(3)
P 		100.6
(0.5)
P 		74.7
(-2.2)
P 		67.3
(-3)
P 		58
C 161.4
(3)
P 		118.4
(0.3)
P 		104.3
(-0.6)
P 		66.1
(-3)
P 		95
avr 146.2
(3) 		104
(-0.1) 		82.6
(-1.6) 		63.7
(-3) 		83

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 200
1 2 3 4 5 6 range
A 62.5
(-1.5)
P 		123.3
(3)
P 		42.5
(-3)
P 		59.2
(-1.8)
P 		77.7
(-0.4)
P 		79.1
(-0.3)
P 		81
B 109.9
(3)
P 		92.5
(1.2)
P 		50.8
(-3)
P 		54.3
(-2.6)
P 		82.5
(0.2)
P 		88.4
(0.8)
P 		59
C 239.3
(3)
P 		74.6
(-1.9)
P 		75.9
(-1.9)
P 		39.1
(-3)
P 		108.9
(-0.9)
P 		79.9
(-1.8)
P 		200
avr 137.2
(3) 		96.8
(0.2) 		56.4
(-2.6) 		50.9
(-3) 		89.7
(-0.3) 		82.5
(-0.8) 		86
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192071_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18470
Sequence Type Exemplar sequence
Representative Public ID F49H12.1 NCBI
Target Description F49H12.1 /REP_DB=WormBase Gene ID /WP=CE28437 /TR=Q9N5S3 /GB=AAF39827.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=C2H2-type zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029525(10), NM_001029526(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029525 NCBI Caenorhabditis elegans Laterally SYmmetric (defective in lateral asymmetry) family member (lsy-2) (lsy-2) mRNA, complete cds. 10/11 None
NM_001029526 NCBI Caenorhabditis elegans Laterally SYmmetric (defective in lateral asymmetry) family member (lsy-2) (lsy-2) mRNA, complete cds. 10/11 None
F49H12.1 ENSEMBL cdna:known chromosome:CEL140:X:2089660:2093235:1 gene:F49H12.1 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2089793-2092723(+) 100.0 100.0
Public Domain and Genome References
Ensembl F49H12.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39827 Laterally symmetric (defective in lateral asymmetry) protein 2, isoform a [Caenorhabditis elegans] ref|NP_001024696.1| Laterally SYmmetric (defective in lateral asymmetry) family member (lsy-2) [Caenorhabditis elegans] 0.0
blast AAX88828 Laterally symmetric (defective in lateral asymmetry) protein 2, isoform b [Caenorhabditis elegans] ref|NP_001024697.1| Laterally SYmmetric (defective in lateral asymmetry) family member (lsy-2) [Caenorhabditis elegans] 0.0
blast CAE68356 Hypothetical protein CBG14093 [Caenorhabditis briggsae] 1.0E-153
blast CAE68356 Hypothetical protein CBG14093 [Caenorhabditis briggsae] 1.0E-151
Protein Domains
Database ID Description E-Value
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.3E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 2.8E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.3E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 2.8E-6
Sequence
Target Sequence 
>C. ELEGANS:192071_AT
aaatctcggttcagcaaccgtcggccgcctgctgacatccctgacgacgccatcgtactt
cgtggagccggaggaccgtactacacgccgccgcctcgtccgaagaagaagaagcttgga
ctcggagaaccagagcactgggtggacaagttgagaagaggagatcttctgccacaagtt
gagcttgaggacaagatcagacgtctcgaagacactatcttcaacaacatgtctcttgag
cgttggggcaaccttttcgagattgcaaagtccattgcattcgagacccatgattgtcca
gtgtgcaagtctcaattcatgaccagaatggattgtgtcagccatcacacactcgaacac
gaaaatcatcgggagggtcttgaatttttctgcgaaaaatgctatagaccatttgctgac
gaggccagctacaatcagcacatgagctaccacacgcgagttagcagtttgattgaaact
ggagaaattgttcctcagccagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATCTCGGTTCAGCAACCGTCGGC 587 115 565 Antisense
ATCGTACTTCGTGGAGCCGGAGGAC 310 33 616 Antisense
GGAGATCTTCTGCCACAAGTTGAGC 243 519 724 Antisense
TGAGCGTTGGGGCAACCTTTTCGAG 651 563 801 Antisense
AAAGTCCATTGCATTCGAGACCCAT 132 123 831 Antisense
GAGACCCATGATTGTCCAGTGTGCA 107 395 847 Antisense
GATTGTGTCAGCCATCACACACTCG 524 435 895 Antisense
GCTATAGACCATTTGCTGACGAGGC 475 303 965 Antisense
TGACGAGGCCAGCTACAATCAGCAC 180 571 981 Antisense
GAGCTACCACACGCGAGTTAGCAGT 326 387 1008 Antisense
TGGAGAAATTGTTCCTCAGCCAGCA 564 549 1044 Antisense
Sequence Source Affymetrix Proprietary Database