[Home] | [Total List]

[192068_s_at]

Description C04F6.4 /REP_DB=WormBase Gene ID /WP=CE03924 /GEN=unc-78 /TR=SW:Q11176 /GB=AAA83588.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=beta transducin
Cluster 6grp_highest_10_10 > 26      6grp_high1_10_10 > 51      4grp_highest_8_8 > 09      4grp_high_8_8 > 53      6grp_highest_nonorm > 56      6grp_total > 61      4grp_total > 58      6grp_highest_sub > 03      6grp_cgc > 83      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2764
1 2 3 4 range
A 1785.5
(-0.5)
P 		3394.1
(3)
P 		2914
(2)
P 		630.1
(-3)
P 		2764
B 1828.9
(-0.8)
P 		3125
(2.5)
P 		3309.2
(3)
P 		940.9
(-3)
P 		2368
C 1820
(-0.1)
P 		2734.4
(3)
P 		2679.4
(2.8)
P 		979.5
(-3)
P 		1755
avr 1811.5
(-0.4) 		3084.5
(3) 		2967.5
(2.7) 		850.2
(-3) 		2234

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1423
1 2 3 4 5 6 range
A 1741
(-1.6)
P 		2273
(2.1)
P 		2182.2
(1.5)
P 		2401.1
(3)
P 		2078.4
(0.7)
P 		1549.3
(-3)
P 		852
B 1737.4
(-1.6)
P 		2094.1
(0.4)
P 		2571
(3)
P 		2552.9
(2.9)
P 		1917.7
(-0.6)
P 		1473.6
(-3)
P 		1097
C 1914.9
(-1.9)
P 		2011.6
(-1.4)
P 		2896.2
(3)
P 		2477.2
(0.9)
P 		1918.6
(-1.8)
P 		1686.4
(-3)
P 		1210
avr 1797.8
(-1.6) 		2126.2
(0.4) 		2549.8
(3) 		2477.1
(2.6) 		1971.6
(-0.5) 		1569.8
(-3) 		980
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 842
1 2 3 4 range
A 650.1
(2)
P 		736.8
(2.8)
P 		761.8
(3)
P 		92.2
(-3)
P 		670
B 583.2
(1)
P 		771.8
(3)
P 		766.8
(2.9)
P 		200.5
(-3)
P 		571
C 602.5
(0.4)
P 		786.1
(1.8)
P 		933.9
(3)
P 		165.2
(-3)
P 		769
avr 611.9
(1.1) 		764.9
(2.5) 		820.8
(3) 		152.6
(-3) 		668

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 488
1 2 3 4 5 6 range
A 320.9
(-3)
P 		808.4
(3)
P 		475.2
(-1.1)
P 		609
(0.5)
P 		627.2
(0.8)
P 		377.2
(-2.3)
P 		488
B 604.5
(-1.6)
P 		697
(0.9)
P 		624.3
(-1)
P 		676.2
(0.3)
P 		779.1
(3)
P 		549.5
(-3)
P 		230
C 709.8
(2.3)
P 		613.8
(-0.1)
P 		737.1
(3)
P 		498.2
(-3)
P 		620.8
(0.1)
P 		564.5
(-1.3)
P 		239
avr 545.1
(-1.6) 		706.4
(3) 		612.2
(0.3) 		594.5
(-0.2) 		675.7
(2.1) 		497.1
(-3) 		209
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192068_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18314
Sequence Type Exemplar sequence
Representative Public ID C04F6.4 NCBI
Target Description C04F6.4 /REP_DB=WormBase Gene ID /WP=CE03924 /GEN=unc-78 /TR=SW:Q11176 /GB=AAA83588.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=beta transducin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029185(11), NM_001029186(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029185 NCBI Caenorhabditis elegans UNCoordinated family member (unc-78) (unc-78) mRNA, complete cds. 11/11 None
NM_001029186 NCBI Caenorhabditis elegans UNCoordinated family member (unc-78) (unc-78) mRNA, complete cds. 10/11 None
SNAP00000029420 ENSEMBL cdna:SNAP chromosome:CEL140:X:3408806:3411601:-1 11/11 None
GENEFINDER00000029425 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3408806:3411601:-1 11/11 None
C04F6.4a ENSEMBL cdna:known chromosome:CEL140:X:3408661:3411602:-1 gene:C04F6.4 11/11 None
C04F6.4b.1 ENSEMBL cdna:known chromosome:CEL140:X:3408681:3411602:-1 gene:C04F6.4 10/11 None
C04F6.4b.2 ENSEMBL cdna:known chromosome:CEL140:X:3408681:3411670:-1 gene:C04F6.4 10/11 None
C04F6.4b.3 ENSEMBL cdna:known chromosome:CEL140:X:3408681:3411609:-1 gene:C04F6.4 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3408806-3411602(-) 100.0 100.0
Public Domain and Genome References
Ensembl C04F6.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA83588 Uncoordinated protein 78, isoform a [Caenorhabditis elegans] ref|NP_001024356.1| UNCoordinated family member (unc-78) [Caenorhabditis elegans] gb|AAK11613.1| UNC-78 [Caenorhabditis elegans] sp|Q11176|WDR1_CAEEL Actin interacting protein 1 (AIP1) (Uncoordinated protein 78) pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From Caenorhabditis Elegans pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1) 0.0
blast CAE68424 Hypothetical protein CBG14204 [Caenorhabditis briggsae] 0.0
blast AAO61444 Uncoordinated protein 78, isoform b [Caenorhabditis elegans] ref|NP_001024357.1| UNCoordinated family member (unc-78) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.2E-5
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0014
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 4.4E-10
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 6.8E-11
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 7.5E-5
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0060
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 9.9E-9
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0039
Sequence
Target Sequence 
>C. ELEGANS:192068_S_AT
gccaacaaattatcttcgcaacctctcggtctcgccgtttccgcagatggagatattgca
gttgctgcttgctataagcatattgcaatttactctcatggaaagctcacggaagtacca
attagctacaattcttcctgtgtggcattatcgaacgataagcaatttgttgctgttggt
ggacaagactcgaaggtccatgtgtacaaactctctggagcaagtgtctctgaagttaaa
acaattgtccatcctgctgaaatcacatctgtcgcattttcgaataatggagctttcctc
gtggcaaccgatcaatcacgaaaggttatcccgtactctgttgcgaacaacttcgagcta
gctcacacaaactcctggactttccataccgccaaggttgcatgtgtttcctggtcaccg
gacaatgtccgtttggcgaccggttccttggataacagcgttattgtatggaacatgaac
aaaccatctgatcatccgatcatcattaaaggtgctcatgctatgtcgtctgtcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCAACAAATTATCTTCGCAACCTC 633 277 1231 Antisense
AGCTACAATTCTTCCTGTGTGGCAT 431 79 1354 Antisense
AACAATTGTCCATCCTGCTGAAATC 620 133 1470 Antisense
GAAATCACATCTGTCGCATTTTCGA 154 363 1489 Antisense
ATAATGGAGCTTTCCTCGTGGCAAC 499 25 1514 Antisense
CGAAAGGTTATCCCGTACTCTGTTG 313 247 1549 Antisense
CTCACACAAACTCCTGGACTTTCCA 562 227 1592 Antisense
ACTTTCCATACCGCCAAGGTTGCAT 33 103 1609 Antisense
AGGTTGCATGTGTTTCCTGGTCACC 307 57 1625 Antisense
GCGACCGGTTCCTTGGATAACAGCG 687 287 1666 Antisense
TGCTCATGCTATGTCGTCTGTCAAT 21 581 1743 Antisense
Sequence Source Affymetrix Proprietary Database